Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 9.8e-155 550.1 270 100.0
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 1.3e-138 496.5 269 87.7
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 1.9e-137 492.7 270 87.0
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 3.2e-137 491.9 270 87.0
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 1.2e-136 490.0 270 87.0
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 6.0e-136 487.6 270 86.7
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 5.1e-135 484.6 270 86.7
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 6.6e-135 484.2 270 86.7
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 1.1e-134 483.4 270 85.2
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 1.9e-134 482.6 270 85.6
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.5e-134 482.3 270 85.6
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.3e-134 481.9 270 85.2
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 7.3e-134 480.7 270 85.2
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 7.3e-134 480.7 270 86.3
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 9.5e-134 480.3 270 84.8
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-133 479.6 270 84.4
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 2.1e-133 479.2 270 84.8
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 2.1e-133 479.2 270 84.4
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.1e-133 479.2 270 85.6
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 2.8e-133 478.8 268 85.8
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 6.2e-133 477.6 271 86.0
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 8.1e-133 477.2 264 86.0
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 2.3e-132 475.7 269 85.5
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 4.0e-132 474.9 270 83.7
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 5.2e-132 474.6 270 84.8
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 6.8e-132 474.2 275 84.7
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 8.9e-132 473.8 272 84.6
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.2e-131 473.4 270 84.8
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.5e-131 473.0 270 83.3
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 1.5e-131 473.0 270 84.4
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.0e-131 472.6 272 84.2
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 2.0e-131 472.6 270 84.4
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 2.0e-131 472.6 270 83.0
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 4.4e-131 471.5 270 83.3
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 4.4e-131 471.5 270 83.0
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 7.6e-131 470.7 270 84.1
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 7.6e-131 470.7 270 84.1
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 9.9e-131 470.3 270 82.6
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 9.9e-131 470.3 270 84.4
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 9.9e-131 470.3 270 83.7
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.3e-130 469.9 270 83.3
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 2.2e-130 469.2 272 82.7
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 2.9e-130 468.8 307 77.2
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 3.7e-130 468.4 270 83.3
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 4.9e-130 468.0 267 83.5
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 8.3e-130 467.2 270 84.1
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 8.3e-130 467.2 270 82.6
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 1.4e-129 466.5 270 82.6
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.9e-129 466.1 270 82.2
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 1.9e-129 466.1 270 82.6
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 2.4e-129 465.7 270 81.9
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 3.2e-129 465.3 270 83.0
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 4.1e-129 464.9 270 82.2
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.1e-129 464.9 270 82.2
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 4.1e-129 464.9 270 82.6
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 4.1e-129 464.9 270 82.6
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 9.2e-129 463.8 270 82.6
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 1.3e-127 459.9 270 81.9
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-127 459.9 276 80.4
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 1.7e-127 459.5 270 80.7
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.3e-127 459.1 270 80.7
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.3e-127 459.1 276 80.4
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.9e-127 458.4 276 80.4
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 5.1e-127 458.0 270 81.1
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 5.1e-127 458.0 270 81.1
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 5.1e-127 458.0 282 77.7
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 6.6e-127 457.6 270 81.5
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 1.9e-126 456.1 270 81.1
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 1.9e-126 456.1 271 81.2
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.3e-126 454.9 270 80.7
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 5.6e-126 454.5 270 81.1
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 7.3e-126 454.1 270 81.1
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 9.6e-126 453.8 270 81.1
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 9.6e-126 453.8 270 80.0
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 2.1e-125 452.6 271 81.2
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 3.6e-125 451.8 270 78.1
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.4e-124 449.9 270 78.1
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 4.0e-124 448.4 271 80.4
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 4.0e-124 448.4 268 78.7
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 6.8e-124 447.6 271 80.4
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 6.8e-124 447.6 272 80.5
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 6.8e-124 447.6 270 77.8
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 2.6e-123 445.7 271 80.1
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 3.4e-123 445.3 270 78.5
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 3.4e-123 445.3 270 77.8
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 4.4e-123 444.9 269 79.2
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 5.8e-123 444.5 268 78.4
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 7.6e-123 444.1 270 77.4
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.3e-122 443.4 270 80.7
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 4.9e-122 441.4 270 79.6
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 6.4e-122 441.0 270 80.4
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 2.4e-121 439.1 269 77.7
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 3.2e-121 438.7 253 84.6
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 1.6e-120 436.4 270 78.1
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.6e-120 436.4 270 75.2
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 3.5e-120 435.3 287 75.6
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 6.0e-120 434.5 270 78.9
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.0e-119 433.7 270 78.5
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 1.7e-119 433.0 270 79.3
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.0e-119 432.2 270 74.8
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 2.5e-118 429.1 270 76.7
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 4.3e-118 428.3 245 84.1
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 4.3e-118 428.3 261 75.9
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 7.3e-118 427.6 270 75.9
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 9.6e-118 427.2 276 77.5
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 1.6e-117 426.4 269 74.0
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 3.6e-117 425.2 269 73.6
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 4.8e-117 424.9 270 76.7
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 4.8e-117 424.9 268 76.1
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 6.2e-117 424.5 270 77.4
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 1.1e-116 423.7 270 75.6
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.9e-116 421.0 270 76.7
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 6.9e-116 421.0 270 75.6
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 9.0e-116 420.6 270 75.6
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 2.0e-115 419.5 266 75.6
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 9.9e-115 417.2 270 72.6
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-113 413.7 270 75.6
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.4e-113 413.3 270 71.9
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 4.2e-113 411.8 267 73.8
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 3.5e-112 408.7 270 75.9
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 6.6e-111 404.4 270 73.3
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-110 403.7 277 69.7
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.3e-110 401.7 271 70.8
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.6e-110 401.4 271 70.8
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.3e-110 401.0 277 69.7
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 9.6e-110 400.6 270 71.1
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.8e-109 399.1 277 69.7
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.6e-109 398.7 272 69.9
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 6.2e-109 397.9 272 69.9
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.1e-108 397.1 270 70.7
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.8e-108 396.4 268 70.1
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-108 396.0 272 69.5
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 4.5e-107 391.7 236 77.5
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 4.5e-107 391.7 273 72.9
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.7e-106 389.8 271 68.6
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 4.9e-106 388.3 271 69.0
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 8.4e-106 387.5 237 78.9
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.2e-104 383.6 270 68.1
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.6e-104 383.3 226 81.4
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 3.5e-104 382.1 272 68.0
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.3e-103 380.2 271 67.9
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 3.0e-103 379.0 271 69.0
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.9e-102 376.3 272 68.4
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 4.3e-102 375.2 271 67.2
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 6.9e-100 367.9 272 66.5
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.1e-96 356.3 250 67.6
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.0e-95 354.0 212 81.1
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.8e-92 343.2 296 59.8
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.3e-92 341.7 198 83.8
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 1.2e-91 340.5 217 77.0
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 1.6e-88 330.1 188 82.4
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-86 323.9 190 79.5
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 3.3e-78 295.8 270 55.6
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 8.0e-64 248.1 190 66.8
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 3.3e-62 242.7 143 81.1
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.6e-59 233.8 181 66.9
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.0e-58 231.1 270 44.4
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.1e-56 221.9 134 77.6
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 5.2e-55 218.8 188 62.2
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 3.4e-54 216.1 137 74.5
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 1.3e-50 204.1 268 42.5
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 5.0e-42 175.6 270 42.2
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 6.8e-39 165.2 278 37.1
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 1.0e-34 151.4 95 68.4
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 2.9e-34 149.8 83 90.4
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 2.5e-33 146.7 89 82.0
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 5.6e-33 145.6 77 87.0
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 4.0e-31 139.4 109 65.1
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.8e-24 116.7 68 79.4
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 5.2e-23 112.5 108 54.6
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 4.4e-22 109.4 69 75.4
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 6.4e-21 105.5 67 65.7
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 2.8e-16 90.1 68 60.3
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 3.4e-14 83.2 60 63.3
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 9.9e-14 81.6 65 64.6
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 2.9e-13 80.1 49 71.4
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 2.9e-13 80.1 49 71.4
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 3.5e-11 73.2 57 66.7
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 6.0e-11 72.4 57 64.9
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 2.5e-09 67.0 50 70.0
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.1e-07 61.6 40 65.0


User provided reference genes

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