Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 3.9e-309 1063.9 525 100.0
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 3.6e-185 652.1 521 62.0
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 8.5e-179 630.9 531 59.5
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.6e-177 626.7 522 60.3
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 6.7e-176 621.3 513 62.8
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 1.7e-174 616.7 514 62.1
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 6.3e-174 614.8 513 62.0
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 6.3e-174 614.8 513 62.0
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 9.1e-173 610.9 515 60.8
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 9.1e-173 610.9 513 61.2
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 2.0e-172 609.8 530 59.6
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 3.2e-170 602.4 536 57.6
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.6e-169 600.1 509 59.5
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.0e-168 597.4 544 57.4
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.0e-168 597.4 544 57.4
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.4e-168 597.0 515 58.4
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 3.3e-167 592.4 522 57.3
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 5.7e-167 591.7 522 58.0
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 3.1e-165 585.9 515 57.3
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 4.1e-165 585.5 534 57.3
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 7.0e-165 584.7 522 57.5
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.6e-164 583.6 526 56.7
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 3.5e-164 582.4 533 56.5
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 4.5e-164 582.0 509 56.6
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-163 579.7 554 56.1
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 3.8e-163 578.9 518 57.1
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 6.5e-163 578.2 519 57.2
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 4.2e-162 575.5 551 54.6
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 5.5e-162 575.1 548 54.9
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 4.7e-161 572.0 510 57.3
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.8e-160 570.1 528 55.7
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 6.8e-160 568.2 531 55.9
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 8.3e-158 561.2 513 58.1
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.8e-157 560.1 536 54.7
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 2.4e-157 559.7 520 55.6
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.6e-156 557.0 529 55.2
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 2.7e-156 556.2 544 53.7
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 5.9e-156 555.1 514 55.1
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 1.1e-154 550.8 505 56.4
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.1e-154 550.8 519 54.1
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 3.2e-154 549.3 510 55.3
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 2.7e-153 546.2 516 56.4
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 2.7e-153 546.2 513 56.1
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 5.7e-151 538.5 516 55.6
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 4.9e-150 535.4 509 53.2
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 1.4e-149 533.9 526 53.4
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.4e-149 533.9 513 54.6
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 3.1e-149 532.7 510 53.7
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 4.1e-149 532.3 542 50.7
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.2e-148 530.8 541 52.5
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 2.7e-148 529.6 530 52.1
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 5.9e-148 528.5 518 55.4
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 5.9e-148 528.5 512 54.3
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 1.3e-147 527.3 547 52.7
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.7e-147 526.9 510 53.5
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.1e-146 524.2 521 52.8
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 1.5e-146 523.9 506 53.6
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 3.3e-146 522.7 519 52.4
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 9.5e-146 521.2 547 48.3
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.2e-145 520.8 538 51.9
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 1.6e-145 520.4 550 51.3
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 4.7e-145 518.8 515 52.0
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 8.0e-145 518.1 522 53.3
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 8.0e-145 518.1 521 52.0
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.4e-144 517.3 519 53.6
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 4.0e-144 515.8 517 50.9
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 6.8e-144 515.0 523 51.8
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 4.4e-143 512.3 523 51.6
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 1.8e-141 506.9 516 50.2
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.8e-141 506.9 473 55.8
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.7e-139 500.4 528 49.6
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 7.3e-138 495.0 518 48.6
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 7.3e-138 495.0 518 51.7
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 7.3e-138 495.0 516 49.8
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.6e-137 493.8 516 49.2
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.8e-137 493.0 554 49.5
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 6.2e-137 491.9 518 51.7
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 4.0e-136 489.2 499 51.1
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 4.4e-135 485.7 507 51.7
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 5.8e-135 485.3 523 48.6
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 5.8e-135 485.3 525 47.0
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.7e-134 483.8 514 49.6
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 2.9e-134 483.0 514 49.6
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 2.9e-134 483.0 512 51.8
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 3.7e-134 482.6 528 47.7
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 8.3e-134 481.5 516 49.0
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 1.9e-133 480.3 516 49.4
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 2.4e-133 479.9 520 48.5
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 3.2e-133 479.6 517 48.4
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 1.6e-132 477.2 516 49.4
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 1.0e-131 474.6 516 49.8
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 3.0e-131 473.0 515 49.7
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 5.0e-131 472.2 515 49.1
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 8.6e-131 471.5 519 48.7
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 8.6e-131 471.5 515 49.5
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.9e-130 470.3 517 48.5
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.1e-129 466.8 516 47.9
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 2.3e-128 463.4 538 46.5
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 3.4e-127 459.5 546 47.3
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.3e-126 457.6 536 46.6
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.1e-125 451.8 518 49.2
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 3.5e-124 449.5 510 47.5
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.1e-120 438.0 555 44.3
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 5.2e-120 435.6 474 51.3
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.0e-115 421.4 534 45.7
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 8.6e-115 418.3 536 45.0
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-114 416.8 494 44.9
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.6e-113 414.1 503 44.7
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 1.6e-113 414.1 532 45.3
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 9.9e-111 404.8 530 44.9
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 3.2e-109 399.8 474 46.2
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 9.6e-106 388.3 544 40.8
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.5e-103 380.9 395 50.4
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.9e-102 376.7 510 43.5
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.6e-100 369.4 494 41.9
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 7.9e-100 368.6 527 40.2
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 6.0e-92 342.4 516 39.0
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 9.6e-90 335.1 571 37.5
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-84 317.0 508 37.6
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 6.0e-84 315.8 482 38.0
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-83 315.1 508 37.8
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.9e-77 294.3 495 35.8
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-75 288.5 513 35.7
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-75 288.1 463 37.8
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.7e-75 285.8 463 37.4
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 3.2e-69 266.9 523 34.4
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.9e-61 241.1 461 34.7
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.9e-61 241.1 461 34.7
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.4e-56 224.2 387 36.7
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 6.7e-51 206.1 283 44.5
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.1e-45 188.7 151 60.9
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.5e-45 188.3 316 38.9
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.2e-44 185.3 172 53.5
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 2.0e-42 177.9 511 29.0
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 4.1e-40 170.2 449 30.3
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 9.1e-40 169.1 529 25.7
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 6.5e-38 162.9 146 56.2
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 5.5e-37 159.8 392 30.4
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 6.8e-35 152.9 534 26.2
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 6.1e-28 129.8 486 24.5
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 2.3e-27 127.9 449 26.7
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.8e-24 118.2 506 23.5
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-23 114.4 287 31.7
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 1.0e-22 112.5 432 23.4
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 2.1e-20 104.8 92 59.8
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 8.0e-20 102.8 376 23.9
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 1.3e-14 85.5 370 21.6
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 6.6e-14 83.2 96 46.9
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.1e-13 82.4 192 32.8
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 4.3e-13 80.5 55 63.6
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 5.6e-13 80.1 63 57.1
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.6e-12 78.6 53 58.5
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 7.5e-10 69.7 128 32.0
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-07 61.6 80 37.5
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 3.5e-07 60.8 63 38.1
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 5.1e-06 57.0 73 42.5
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 6.6e-06 56.6 73 42.5


User provided reference genes

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