Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 1.5e-69 266.2 145 100.0
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.9e-19 99.8 89 57.3
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 2.5e-19 99.4 84 58.3
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.2e-19 99.0 89 57.3
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.2e-18 97.1 86 59.3
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.1e-18 96.3 89 56.2
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 2.1e-18 96.3 86 58.1
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.8e-17 93.2 86 58.1
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.3e-17 92.8 88 59.1
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 3.0e-17 92.4 89 51.7
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 5.1e-17 91.7 80 60.0
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.7e-17 91.3 121 47.1
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.9e-16 89.7 87 56.3
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 3.3e-16 89.0 88 53.4
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.3e-16 88.6 79 55.7
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 5.7e-16 88.2 90 54.4
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 7.4e-16 87.8 80 58.8
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 7.4e-16 87.8 90 52.2
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 7.4e-16 87.8 87 54.0
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 9.7e-16 87.4 86 53.5
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.3e-15 87.0 84 52.4
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.3e-15 87.0 87 54.0
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.6e-15 86.7 79 60.8
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 1.6e-15 86.7 84 57.1
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 2.2e-15 86.3 80 58.8
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 2.2e-15 86.3 93 53.8
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 2.2e-15 86.3 89 52.8
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.8e-15 85.9 78 61.5
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.8e-15 85.9 80 58.8
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 4.8e-15 85.1 86 53.5
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.8e-15 85.1 90 53.3
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.8e-15 85.1 90 53.3
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 4.8e-15 85.1 79 59.5
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 6.3e-15 84.7 79 60.8
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.1e-14 84.0 79 58.2
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-14 84.0 85 52.9
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.1e-14 84.0 86 54.7
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.4e-14 83.6 78 55.1
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.8e-14 83.2 79 58.2
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.8e-14 83.2 87 55.2
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 3.1e-14 82.4 93 51.6
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.1e-14 82.4 80 53.8
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.1e-14 82.4 81 53.1
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.1e-14 82.0 79 59.5
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 6.9e-14 81.3 89 50.6
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 6.9e-14 81.3 86 46.5
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.0e-14 80.9 86 52.3
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.2e-13 80.5 97 47.4
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.5e-13 80.1 87 50.6
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 2.0e-13 79.7 78 56.4
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 2.0e-13 79.7 94 48.9
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 2.6e-13 79.3 88 50.0
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.6e-13 79.3 84 51.2
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.6e-13 79.3 91 48.4
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 3.4e-13 79.0 87 49.4
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.4e-13 79.0 87 52.9
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.4e-13 79.0 87 52.9
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 3.4e-13 79.0 87 52.9
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 4.5e-13 78.6 84 48.8
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 5.9e-13 78.2 78 55.1
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 5.9e-13 78.2 85 48.2
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 5.9e-13 78.2 87 52.9
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 5.9e-13 78.2 87 49.4
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 5.9e-13 78.2 87 50.6
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 7.7e-13 77.8 80 55.0
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 7.7e-13 77.8 123 43.1
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 7.7e-13 77.8 87 51.7
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.0e-12 77.4 84 50.0
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.0e-12 77.4 87 49.4
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.0e-12 77.4 79 54.4
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.3e-12 77.0 78 53.8
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.7e-12 76.6 80 55.0
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 2.2e-12 76.3 81 53.1
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 2.2e-12 76.3 84 48.8
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.8e-12 75.5 87 51.7
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 3.8e-12 75.5 81 48.1
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 3.8e-12 75.5 81 48.1
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 3.8e-12 75.5 88 46.6
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 3.8e-12 75.5 87 51.7
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 5.0e-12 75.1 86 47.7
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 8.5e-12 74.3 82 50.0
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 8.5e-12 74.3 102 46.1
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 8.5e-12 74.3 83 45.8
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.1e-11 73.9 84 53.6
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.1e-11 73.9 86 48.8
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.4e-11 73.6 85 49.4
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.4e-11 73.6 87 49.4
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.4e-11 73.6 87 49.4
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 1.9e-11 73.2 84 50.0
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.9e-11 73.2 84 50.0
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.9e-11 73.2 89 44.9
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.9e-11 73.2 84 45.2
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.9e-11 73.2 84 45.2
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.2e-11 72.4 86 48.8
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 5.5e-11 71.6 78 52.6
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 5.5e-11 71.6 87 44.8
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 5.5e-11 71.6 84 46.4
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 5.5e-11 71.6 85 50.6
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 7.2e-11 71.2 88 47.7
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 7.2e-11 71.2 78 52.6
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 7.2e-11 71.2 87 49.4
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 9.4e-11 70.9 85 43.5
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-10 70.1 82 50.0
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.6e-10 70.1 82 48.8
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 2.1e-10 69.7 87 46.0
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 2.7e-10 69.3 84 46.4
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 2.7e-10 69.3 84 47.6
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 3.6e-10 68.9 58 56.9
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.6e-10 68.9 84 47.6
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 3.6e-10 68.9 83 47.0
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 4.6e-10 68.6 78 48.7
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 6.1e-10 68.2 87 46.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 6.1e-10 68.2 82 46.3
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 6.1e-10 68.2 79 50.6
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 6.1e-10 68.2 91 44.0
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 7.9e-10 67.8 98 48.0
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-09 67.4 86 45.3
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.0e-09 67.4 84 41.7
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.0e-09 67.4 81 44.4
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.0e-09 67.4 81 50.6
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.4e-09 67.0 84 47.6
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.8e-09 66.6 81 48.1
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.8e-09 66.6 82 46.3
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 3.0e-09 65.9 82 46.3
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 3.0e-09 65.9 82 46.3
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 3.9e-09 65.5 79 45.6
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 5.1e-09 65.1 91 46.2
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 5.1e-09 65.1 72 51.4
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 6.7e-09 64.7 86 43.0
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 6.7e-09 64.7 54 59.3
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 6.7e-09 64.7 84 42.9
Os06g0530200 Oryza sativa ssp. japonica HOM05D004051 ORTHO05D004480 6.7e-09 64.7 97 45.4
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 8.8e-09 64.3 83 44.6
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 8.8e-09 64.3 82 46.3
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-08 63.9 79 44.3
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.5e-08 63.5 79 43.0
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.0e-08 63.2 83 48.2
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 2.0e-08 63.2 49 63.3
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 2.0e-08 63.2 79 45.6
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.0e-08 63.2 93 45.2
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 2.5e-08 62.8 79 43.0
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 3.3e-08 62.4 79 44.3
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 4.3e-08 62.0 79 41.8
FAN06G1266 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.3e-08 62.0 78 48.7
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 5.7e-08 61.6 83 44.6
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 7.4e-08 61.2 79 41.8
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 9.7e-08 60.8 79 43.0
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 1.3e-07 60.5 57 56.1
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 1.3e-07 60.5 81 40.7
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.2e-07 59.7 81 43.2
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.2e-07 59.7 84 44.0
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.8e-07 59.3 79 41.8
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 3.7e-07 58.9 76 46.1
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.7e-07 58.9 84 44.0
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 4.8e-07 58.5 56 51.8
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 6.3e-07 58.2 85 38.8
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 8.2e-07 57.8 77 41.6
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 8.2e-07 57.8 158 29.7
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 8.2e-07 57.8 84 42.9
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.1e-06 57.4 77 41.6
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.4e-06 57.0 79 39.2
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.4e-06 57.0 77 42.9
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.4e-06 57.0 85 41.2
CsaV3_5G000560 Cucumis sativus L. HOM05D004051 ORTHO05D004480 1.8e-06 56.6 43 60.5
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.4e-06 56.2 76 43.4
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 2.4e-06 56.2 59 52.5
Zm00001eb383200 Zea mays HOM05D004051 ORTHO05D004480 2.4e-06 56.2 91 44.0
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 5.3e-06 55.1 77 39.0
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 5.3e-06 55.1 93 37.6
Prupe.2G311800 Prunus persica HOM05D004051 ORTHO05D004480 6.9e-06 54.7 68 45.6
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 9.1e-06 54.3 80 42.5


User provided reference genes

Program Settings