Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 2.5e-159 565.5 297 100.0
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 7.4e-87 324.7 199 79.9
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 2.8e-86 322.8 232 70.3
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 4.8e-86 322.0 195 80.0
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 6.2e-86 321.6 207 77.3
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.1e-85 320.9 232 69.8
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 1.8e-85 320.1 195 81.0
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 3.1e-85 319.3 198 77.8
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 3.1e-85 319.3 198 77.3
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 4.0e-85 318.9 195 81.0
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 5.3e-85 318.5 193 79.8
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 6.9e-85 318.2 195 81.0
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 6.9e-85 318.2 195 80.0
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 6.9e-85 318.2 195 79.5
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 9.0e-85 317.8 195 80.5
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 9.0e-85 317.8 195 80.5
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 9.0e-85 317.8 195 80.5
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 9.0e-85 317.8 208 76.4
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 9.0e-85 317.8 194 81.4
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 1.5e-84 317.0 198 77.8
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.0e-84 316.6 195 80.5
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 2.0e-84 316.6 194 78.4
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 3.4e-84 315.8 202 77.7
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 5.8e-84 315.1 195 80.5
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 5.8e-84 315.1 195 80.0
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 9.9e-84 314.3 195 77.4
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 9.9e-84 314.3 195 78.5
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 1.7e-83 313.5 196 78.1
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 2.2e-83 313.2 195 76.9
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 2.2e-83 313.2 195 79.5
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 2.9e-83 312.8 202 75.2
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 3.8e-83 312.4 207 74.9
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 3.8e-83 312.4 196 78.6
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 3.8e-83 312.4 194 78.9
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 3.8e-83 312.4 195 76.4
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 4.9e-83 312.0 195 77.4
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 6.4e-83 311.6 195 76.9
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 6.4e-83 311.6 196 77.6
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 8.4e-83 311.2 194 79.9
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 1.1e-82 310.8 194 76.3
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.1e-82 310.8 199 78.9
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.1e-82 310.8 199 78.9
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 1.4e-82 310.5 196 76.5
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 1.4e-82 310.5 195 80.0
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 1.4e-82 310.5 196 77.0
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 1.4e-82 310.5 196 77.0
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 2.5e-82 309.7 194 78.9
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 3.2e-82 309.3 196 76.5
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 4.2e-82 308.9 195 79.0
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 5.5e-82 308.5 198 75.3
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 5.5e-82 308.5 195 78.5
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 7.1e-82 308.1 195 76.4
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 1.2e-81 307.4 198 76.3
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 4.6e-81 305.4 198 76.8
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 1.3e-80 303.9 196 75.5
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 2.3e-80 303.1 194 76.3
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 2.3e-80 303.1 198 74.7
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 3.0e-80 302.8 227 68.3
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 3.9e-80 302.4 203 72.4
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 3.9e-80 302.4 203 72.9
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 5.1e-80 302.0 203 72.9
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 6.7e-80 301.6 201 73.1
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 1.5e-79 300.4 203 72.4
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 1.5e-79 300.4 197 75.6
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 2.5e-79 299.7 194 73.7
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 3.3e-79 299.3 216 71.8
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 3.3e-79 299.3 197 72.6
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 9.6e-79 297.7 198 72.7
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 1.6e-78 297.0 197 74.1
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 2.8e-78 296.2 198 72.2
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 3.7e-78 295.8 193 71.5
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 1.1e-77 294.3 198 73.7
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 1.4e-77 293.9 197 72.6
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 2.4e-77 293.1 195 73.3
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 3.1e-77 292.7 198 74.2
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 9.0e-77 291.2 198 72.2
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 2.6e-76 289.7 231 64.1
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 1.3e-75 287.3 208 68.8
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 1.7e-75 287.0 193 71.5
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 2.9e-75 286.2 197 70.1
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 6.5e-75 285.0 194 71.1
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 1.1e-74 284.3 205 69.8
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 1.9e-74 283.5 186 74.2
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 2.5e-74 283.1 184 73.4
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 2.5e-74 283.1 195 72.8
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 3.2e-74 282.7 200 67.5
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 5.5e-74 282.0 198 70.7
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 1.2e-73 280.8 206 67.5
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 1.2e-73 280.8 206 67.5
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 1.2e-73 280.8 206 67.5
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 1.6e-73 280.4 197 69.5
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 2.1e-73 280.0 208 66.8
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 2.1e-73 280.0 208 66.8
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 2.7e-73 279.6 195 70.3
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 4.6e-73 278.9 204 67.2
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 1.0e-72 277.7 197 70.1
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 1.5e-71 273.9 195 68.2
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 1.9e-71 273.5 208 65.4
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 1.9e-71 273.5 201 66.2
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 4.3e-71 272.3 199 65.3
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 3.1e-69 266.2 171 74.9
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 3.8e-67 259.2 202 63.9
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 6.3e-62 241.9 163 73.0
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 1.4e-61 240.7 198 62.6
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 5.3e-61 238.8 197 59.9
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 1.3e-59 234.2 155 74.2
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 4.2e-58 229.2 200 53.5
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.0e-56 224.6 144 76.4
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 2.3e-56 223.4 179 64.2
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 1.8e-53 213.8 188 60.6
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 2.4e-53 213.4 218 52.3
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 2.4e-53 213.4 141 75.9
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 2.0e-52 210.3 197 54.8
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 6.5e-51 205.3 140 69.3
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 8.5e-51 204.9 133 72.9
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 1.9e-50 203.8 223 55.2
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 6.3e-46 188.7 158 58.2
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 5.0e-35 152.5 182 45.1
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 9.5e-26 121.7 194 39.7
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 3.7e-22 109.8 237 32.9
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 6.3e-22 109.0 163 41.7
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 2.0e-20 104.0 179 39.1
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 2.2e-14 84.0 50 74.0
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 2.2e-14 84.0 47 80.9
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 3.7e-14 83.2 49 75.5
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 3.2e-13 80.1 61 63.9
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 8.9e-08 62.0 34 79.4
MCO03G036 Micromonas commoda HOM05D037152 ORTHO05D034124 5.8e-07 59.3 163 31.3


User provided reference genes

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