Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 2.0e-69 265.8 148 100.0
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.6e-50 203.0 148 75.0
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 2.3e-49 199.1 148 75.7
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 3.4e-48 195.3 148 72.3
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 7.5e-48 194.1 148 73.6
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 9.8e-48 193.7 148 73.0
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 9.8e-48 193.7 148 72.3
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 3.7e-47 191.8 148 71.6
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 4.8e-47 191.4 148 70.9
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 4.8e-47 191.4 148 72.3
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.4e-46 189.9 148 70.9
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.8e-46 189.5 148 68.9
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 3.1e-46 188.7 148 69.6
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.1e-46 188.7 148 70.3
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.1e-46 188.3 148 71.6
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 5.4e-46 188.0 148 70.9
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.4e-46 188.0 148 70.3
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 5.4e-46 188.0 148 70.3
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.2e-45 186.8 148 70.9
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.6e-45 186.4 148 68.9
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 2.7e-45 185.7 148 68.9
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 3.5e-45 185.3 147 70.1
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 4.5e-45 184.9 148 70.3
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.0e-44 181.4 144 70.1
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 5.0e-44 181.4 148 68.9
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 5.0e-44 181.4 148 66.9
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 6.5e-44 181.0 148 66.2
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.1e-43 180.3 144 69.4
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 5.5e-43 177.9 148 66.9
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 5.5e-43 177.9 150 70.0
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 7.2e-43 177.6 143 69.2
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.2e-42 176.8 148 66.2
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 4.7e-42 174.9 148 67.6
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 8.0e-42 174.1 150 66.7
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 8.0e-42 174.1 148 67.6
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.8e-41 172.9 148 64.9
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 4.0e-41 171.8 148 67.6
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.0e-40 169.5 148 65.5
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 2.0e-40 169.5 143 67.1
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.4e-40 168.7 143 67.1
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 3.4e-40 168.7 148 64.2
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 2.2e-39 166.0 148 63.5
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.8e-39 165.6 148 61.5
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 3.7e-39 165.2 150 64.0
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 6.3e-39 164.5 151 62.9
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.4e-38 163.3 143 65.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 3.1e-38 162.2 148 62.2
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 3.1e-38 162.2 140 68.6
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.1e-38 162.2 152 61.2
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.1e-38 161.8 148 65.5
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 5.4e-38 161.4 151 61.6
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 5.4e-38 161.4 151 61.6
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 9.2e-38 160.6 150 64.0
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.2e-37 160.2 144 63.2
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.6e-37 159.8 150 60.0
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 1.6e-37 159.8 145 62.1
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 4.5e-37 158.3 150 62.0
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 5.9e-37 157.9 152 61.2
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.3e-36 156.0 150 60.7
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 2.9e-36 155.6 141 60.3
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 2.9e-36 155.6 148 60.8
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 5.0e-36 154.8 152 59.9
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 4.3e-35 151.8 143 59.4
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 9.5e-35 150.6 132 63.6
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 9.5e-35 150.6 119 69.7
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 2.1e-34 149.4 155 56.1
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 4.7e-34 148.3 140 58.6
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.3e-33 146.0 119 69.7
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 5.2e-33 144.8 149 58.4
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-32 143.7 149 58.4
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.2e-32 143.7 149 58.4
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.4e-32 141.7 149 58.4
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 5.8e-32 141.4 148 57.4
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 9.8e-32 140.6 148 56.8
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.7e-31 139.8 120 67.5
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 1.7e-31 139.8 148 56.8
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 2.9e-31 139.0 119 67.2
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.9e-31 139.0 138 57.2
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 4.9e-31 138.3 151 55.0
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 6.4e-31 137.9 119 67.2
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 6.4e-31 137.9 119 67.2
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.4e-30 136.0 148 55.4
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.4e-30 136.0 118 65.3
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 4.1e-30 135.2 148 55.4
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 4.1e-30 135.2 148 55.4
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 4.1e-30 135.2 148 55.4
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 4.1e-30 135.2 148 56.1
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 7.0e-30 134.4 148 55.4
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 1.2e-29 133.7 148 54.1
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.6e-29 133.3 148 54.7
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.6e-29 133.3 148 54.7
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 2.0e-29 132.9 148 54.7
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 2.7e-29 132.5 149 56.4
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 3.5e-29 132.1 148 56.1
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.6e-29 131.7 138 60.1
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 4.6e-29 131.7 148 54.7
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 6.0e-29 131.3 148 54.7
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 6.0e-29 131.3 148 55.4
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 6.0e-29 131.3 150 55.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 6.0e-29 131.3 150 55.3
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 7.8e-29 131.0 114 66.7
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 7.8e-29 131.0 121 65.3
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.3e-28 130.2 144 55.6
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 3.9e-28 128.6 114 65.8
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 3.9e-28 128.6 112 63.4
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 5.0e-28 128.3 119 63.0
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.6e-28 127.9 150 55.3
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.5e-27 125.9 114 64.9
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 2.5e-27 125.9 140 52.1
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.3e-27 125.6 150 54.7
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.3e-27 125.6 149 55.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 4.3e-27 125.2 111 64.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.1e-26 122.9 125 56.0
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 6.2e-26 121.3 148 48.6
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 7.5e-24 114.4 149 51.0
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.2e-23 112.8 151 53.6
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.8e-17 93.2 75 66.7
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.2e-16 90.5 119 48.7
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.5e-16 90.1 79 62.0
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.2e-15 86.3 89 57.3
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.4e-14 83.6 101 52.5
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 2.4e-14 82.8 72 68.1
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.1e-13 79.7 101 52.5
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 5.6e-11 71.6 92 48.9
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 3.6e-10 68.9 89 48.3
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 4.7e-10 68.6 92 48.9
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.8e-09 66.6 59 62.7
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 6.8e-09 64.7 135 36.3
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 7.6e-08 61.2 83 43.4
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 1.3e-07 60.5 57 61.4
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 2.2e-07 59.7 134 32.1
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.8e-07 58.9 128 40.6
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.8e-07 58.9 128 40.6
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 9.2e-06 54.3 90 42.2


User provided reference genes

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