Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 6.1e-184 647.9 478 100.0
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 5.2e-143 511.9 478 86.0
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 7.2e-76 288.9 472 56.8
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 2.7e-75 287.0 473 60.9
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 2.2e-72 277.3 476 60.5
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 1.5e-68 264.6 472 59.5
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 1.4e-66 258.1 476 47.1
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 6.8e-66 255.8 461 48.6
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 2.0e-65 254.2 461 48.6
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.0e-65 254.2 472 60.4
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 3.4e-65 253.4 475 47.4
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 3.4e-65 253.4 464 50.0
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 4.4e-65 253.1 470 57.2
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 4.4e-65 253.1 470 57.2
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 4.4e-65 253.1 470 57.2
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 2.8e-64 250.4 459 47.3
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 4.8e-64 249.6 472 60.0
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 6.3e-64 249.2 468 50.6
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 3.1e-63 246.9 452 60.6
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 4.1e-63 246.5 475 46.7
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 7.0e-63 245.7 472 58.5
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 7.0e-63 245.7 449 60.8
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 1.2e-62 245.0 471 45.9
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 2.0e-62 244.2 476 51.5
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 1.3e-61 241.5 453 51.4
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 1.7e-61 241.1 470 56.8
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 2.2e-61 240.7 471 50.5
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 2.2e-61 240.7 473 58.6
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 5.0e-61 239.6 444 50.7
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 6.5e-61 239.2 460 57.8
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 1.1e-60 238.4 473 56.2
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.5e-60 236.1 471 52.0
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 5.5e-60 236.1 455 51.0
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 7.2e-60 235.7 471 46.3
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 7.2e-60 235.7 472 57.6
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.2e-59 235.0 468 57.5
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.2e-59 235.0 448 59.8
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 1.6e-59 234.6 469 57.8
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 8.0e-59 232.3 469 55.7
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 1.4e-58 231.5 455 55.8
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 1.8e-58 231.1 466 59.0
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 3.0e-58 230.3 476 48.7
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 6.8e-58 229.2 476 53.6
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 2.0e-57 227.6 458 55.2
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 2.0e-57 227.6 450 60.2
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 3.4e-57 226.9 448 47.5
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 4.4e-57 226.5 474 57.0
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 6.3e-56 222.6 474 56.1
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 2.4e-55 220.7 476 56.3
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 3.5e-54 216.9 441 56.7
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 5.9e-54 216.1 455 54.9
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 7.7e-54 215.7 473 55.6
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 1.7e-53 214.5 454 52.9
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 2.3e-53 214.2 472 56.8
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 2.9e-53 213.8 469 53.5
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 2.9e-53 213.8 473 52.9
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 7.3e-52 209.1 455 47.7
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 7.3e-52 209.1 443 50.6
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 8.0e-51 205.7 477 34.6
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 6.8e-50 202.6 438 53.7
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 6.8e-50 202.6 458 49.1
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 1.5e-49 201.4 440 50.0
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 1.5e-49 201.4 460 51.1
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 5.7e-49 199.5 476 55.3
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 1.2e-46 191.8 390 59.2
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 3.5e-46 190.3 182 52.7
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 1.0e-45 188.7 475 45.1
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 1.3e-45 188.3 464 51.7
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 3.0e-45 187.2 466 54.5
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 5.6e-44 183.0 181 51.9
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 2.1e-43 181.0 436 56.7
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 4.7e-43 179.9 457 47.3
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 8.9e-42 175.6 470 53.6
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 2.0e-41 174.5 476 52.3
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 7.5e-41 172.6 169 51.5
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 3.7e-40 170.2 475 43.4
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 3.7e-40 170.2 456 45.6
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 4.9e-40 169.9 474 43.9
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 8.3e-40 169.1 448 44.4
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.9e-39 167.9 448 54.7
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 7.8e-38 162.5 458 52.4
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 1.7e-37 161.4 141 54.6
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 2.3e-37 161.0 160 47.5
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 1.2e-35 155.2 398 52.8
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 1.6e-35 154.8 178 41.6
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 2.1e-35 154.5 419 55.1
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 2.8e-35 154.1 379 58.6
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 4.7e-35 153.3 429 53.4
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.4e-34 151.8 428 55.4
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 2.0e-33 147.9 380 59.7
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 3.4e-33 147.1 428 54.4
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 2.4e-31 141.0 350 62.6
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 9.2e-31 139.0 456 39.7
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 1.6e-30 138.3 450 50.0
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 6.0e-30 136.3 334 65.9
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 3.0e-29 134.0 343 63.3
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 4.3e-28 130.2 335 48.1
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.4e-26 125.2 347 62.0
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 1.8e-26 124.8 427 44.0
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 2.6e-25 120.9 161 39.1
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 4.4e-25 120.2 142 42.3
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 1.9e-23 114.8 136 41.2
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 3.5e-22 110.5 124 43.5
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 1.3e-21 108.6 129 41.9
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 2.3e-21 107.8 376 55.1
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 6.6e-21 106.3 357 57.1
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 2.5e-20 104.4 143 37.1
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 3.3e-20 104.0 136 39.7
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.2e-19 102.1 123 39.8
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.2e-19 102.1 123 41.5
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 1.6e-19 101.7 128 39.8
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 5.8e-17 93.2 105 41.0
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.8e-17 93.2 122 39.3
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 2.3e-13 81.3 116 42.2
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 5.1e-13 80.1 123 31.7
FAN04G1593 Fragaria x ananassa HOM05D006400 ORTHO05D008039 6.2e-11 73.2 54 66.7
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 7.6e-09 66.2 131 33.6
SalBow6G5229 Salvia bowleyana HOM05D007128 ORTHO05D009059 2.9e-08 64.3 144 28.5
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 3.8e-08 63.9 410 29.0
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 8.4e-08 62.8 87 39.1
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 1.4e-07 62.0 118 36.4
Cc03_g13390 Coffea canephora HOM05D007128 ORTHO05D009059 1.9e-07 61.6 144 25.7
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 3.2e-07 60.8 142 28.2
Prupe.1G186300 Prunus persica HOM05D007128 ORTHO05D009059 3.2e-07 60.8 144 26.4
Os03g0225300 Oryza sativa ssp. japonica HOM05D006400 ORTHO05D008039 5.4e-07 60.1 137 27.7
Sc16g0009730 Simmondsia chinensis HOM05D007128 ORTHO05D009059 5.4e-07 60.1 140 27.1
GSVIVG01013571001 Vitis vinifera HOM05D007128 ORTHO05D009059 5.4e-07 60.1 141 27.0
A06p17960 Brassica napus HOM05D000424 ORTHO05D000355 7.1e-07 59.7 158 27.2
BraA06t24887Z Brassica rapa HOM05D000424 ORTHO05D000355 7.1e-07 59.7 158 27.2
Migut.N00468 Erythranthe guttata HOM05D007128 ORTHO05D009059 7.1e-07 59.7 144 28.5
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 1.6e-06 58.5 144 26.4
AUR62007125 Chenopodium quinoa HOM05D000093 ORTHO05D007866 2.1e-06 58.2 44 59.1
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 3.5e-06 57.4 141 26.2
Nn5g27627 Nelumbo nucifera HOM05D007128 ORTHO05D009059 3.5e-06 57.4 146 26.7
MSTRG.26768 Avicennia marina HOM05D007128 ORTHO05D009059 4.6e-06 57.0 144 25.0
Oeu061587.1 Olea europaea HOM05D007128 ORTHO05D009059 4.6e-06 57.0 144 26.4
RcHm_v2.0_Chr6g0303651 Rosa chinensis HOM05D000424 ORTHO05D000355 4.6e-06 57.0 130 25.4
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 6.0e-06 56.6 141 26.2
Cpa.g.sc222.25 Carica papaya HOM05D006596 ORTHO05D008497 6.0e-06 56.6 136 25.7
CAN.G1681.10 Capsicum annuum HOM05D007128 ORTHO05D009059 7.9e-06 56.2 144 27.1
Lj6C61T6 Lonicera japonica HOM05D007128 ORTHO05D009059 7.9e-06 56.2 144 25.7
Prupe.3G160100 Prunus persica HOM05D002007 ORTHO05D000355 7.9e-06 56.2 140 30.0
Rhsim08G0089900 Rhododendron simsii HOM05D000424 ORTHO05D000355 7.9e-06 56.2 123 27.6
Solyc02g081250.3 Solanum lycopersicum HOM05D000189 ORTHO05D009059 7.9e-06 56.2 144 25.7
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 7.9e-06 56.2 144 24.3


User provided reference genes

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