Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3344 Punica granatum HOM05D003009 ORTHO05D001701 1.2e-114 416.4 198 100.0
PGR042G0148 Punica granatum HOM05D003009 ORTHO05D001701 7.4e-35 151.4 247 41.3
Sed0027600 Sechium edule HOM05D003009 ORTHO05D001701 3.7e-18 95.9 81 51.9
Lalb_Chr20g0121811 Lupinus albus HOM05D003009 ORTHO05D001701 2.4e-17 93.2 112 43.8
MELO3C002610.2 Cucumis melo HOM05D003009 ORTHO05D001701 5.4e-17 92.0 81 50.6
BcaB02g09517 Brassica carinata HOM05D003009 ORTHO05D001701 9.1e-17 91.3 91 45.1
ClCG03G008180 Citrullus lanatus HOM05D003009 ORTHO05D001701 9.1e-17 91.3 79 51.9
Cfa000485 Carpinus fangiana HOM05D003009 ORTHO05D001701 1.6e-16 90.5 84 51.2
A05p10940 Brassica napus HOM05D003009 ORTHO05D001701 4.5e-16 89.0 89 47.2
BraA05t20040Z Brassica rapa HOM05D003009 ORTHO05D001701 4.5e-16 89.0 89 47.2
FAN11G0879 Fragaria x ananassa HOM05D003009 ORTHO05D001701 4.5e-16 89.0 104 43.3
CsaV3_1G012370 Cucumis sativus L. HOM05D003009 ORTHO05D001701 5.9e-16 88.6 81 49.4
Cpa.g.sc27.37 Carica papaya HOM05D003009 ORTHO05D001701 7.7e-16 88.2 84 48.8
Sed0006317 Sechium edule HOM05D003009 ORTHO05D001701 1.0e-15 87.8 84 48.8
BcaB02g09518 Brassica carinata HOM05D003009 ORTHO05D001701 1.3e-15 87.4 89 44.9
HanXRQChr16g0516201 Helianthus annuus HOM05D003009 ORTHO05D001701 2.2e-15 86.7 86 48.8
Sc24g0001000 Simmondsia chinensis HOM05D003009 ORTHO05D001701 2.9e-15 86.3 101 43.6
FvH4_3g09040 Fragaria vesca HOM05D003009 ORTHO05D001701 3.8e-15 85.9 104 42.3
MELO3C007279.2 Cucumis melo HOM05D003009 ORTHO05D001701 5.0e-15 85.5 84 47.6
Duzib192G0967 Durio zibethinus HOM05D003009 ORTHO05D001701 5.0e-15 85.5 74 51.4
Actinidia05644 Actinidia chinensis HOM05D003009 ORTHO05D001701 6.5e-15 85.1 155 32.9
Sabra04G0027800 Salix brachista HOM05D003009 ORTHO05D001701 6.5e-15 85.1 87 44.8
FAN21G3284 Fragaria x ananassa HOM05D003009 ORTHO05D001701 8.5e-15 84.7 105 41.9
Hma1.2p1_0736F.1_g210750 Hydrangea macrophylla HOM05D003009 ORTHO05D001701 8.5e-15 84.7 78 48.7
Prupe.4G048800 Prunus persica HOM05D003009 ORTHO05D001701 8.5e-15 84.7 82 45.1
AT2G34700 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 1.1e-14 84.3 91 44.0
Potri.004G044700 Populus trichocarpa HOM05D003009 ORTHO05D001701 1.1e-14 84.3 76 48.7
QL05p041061 Quercus lobata HOM05D003009 ORTHO05D001701 1.1e-14 84.3 76 48.7
Sed0027489 Sechium edule HOM05D003009 ORTHO05D001701 1.9e-14 83.6 81 48.1
Manes.16G028850 Manihot esculenta HOM05D003009 ORTHO05D001701 2.5e-14 83.2 76 47.4
RcHm_v2.0_Chr5g0008631 Rosa chinensis HOM05D003009 ORTHO05D001701 2.5e-14 83.2 84 45.2
Sp4g16980 Schrenkiella parvula HOM05D003009 ORTHO05D001701 2.5e-14 83.2 87 46.0
Aa31LG6G5170 Aethionema arabicum HOM05D003009 ORTHO05D001701 3.2e-14 82.8 84 45.2
C04p14040 Brassica napus HOM05D003009 ORTHO05D001701 3.2e-14 82.8 89 42.7
BolC4t22995H Brassica oleracea HOM05D003009 ORTHO05D001701 3.2e-14 82.8 89 42.7
CiPaw.09G060900 Carya illinoinensis HOM05D003009 ORTHO05D001701 3.2e-14 82.8 76 48.7
FAN25G2997 Fragaria x ananassa HOM05D003009 ORTHO05D001701 3.2e-14 82.8 105 41.9
THA.LOC104812275 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 3.2e-14 82.8 84 44.0
Thecc.06G185700 Theobroma cacao HOM05D003009 ORTHO05D001701 3.2e-14 82.8 74 48.6
Dinv17322 Davidia involucrata HOM05D003009 ORTHO05D001701 5.5e-14 82.0 78 47.4
Duzib235G1045 Durio zibethinus HOM05D003009 ORTHO05D001701 5.5e-14 82.0 74 50.0
Thhalv10017961m.g Eutrema salsugineum HOM05D003009 ORTHO05D001701 5.5e-14 82.0 90 43.3
Lj6g0021953 Lotus japonicus HOM05D003009 ORTHO05D001701 5.5e-14 82.0 85 43.5
Manes.17G046500 Manihot esculenta HOM05D003009 ORTHO05D001701 5.5e-14 82.0 76 50.0
BcaC02g11549 Brassica carinata HOM05D003009 ORTHO05D001701 7.2e-14 81.6 89 41.6
CsaV3_6G050170 Cucumis sativus L. HOM05D003009 ORTHO05D001701 7.2e-14 81.6 75 50.7
FAN16G3267 Fragaria x ananassa HOM05D003009 ORTHO05D001701 7.2e-14 81.6 105 39.0
Lalb_Chr16g0383811 Lupinus albus HOM05D003009 ORTHO05D001701 7.2e-14 81.6 85 48.2
GSVIVG01007286001 Vitis vinifera HOM05D003009 ORTHO05D001701 7.2e-14 81.6 76 48.7
Carub.0004s1639 Capsella rubella HOM05D003009 ORTHO05D001701 9.4e-14 81.3 78 44.9
Ca_18551_v3 Cicer arietinum L. HOM05D003009 ORTHO05D001701 9.4e-14 81.3 85 45.9
ClCG01G023040 Citrullus lanatus HOM05D003009 ORTHO05D001701 9.4e-14 81.3 75 49.3
Lj1A1203T34 Lonicera japonica HOM05D003009 ORTHO05D001701 9.4e-14 81.3 75 46.7
Lj2A289T21 Lonicera japonica HOM05D003009 ORTHO05D001701 9.4e-14 81.3 75 50.7
MD10G1293100 Malus domestica HOM05D003009 ORTHO05D001701 9.4e-14 81.3 76 48.7
vmacro03876 Vaccinium macrocarpon HOM05D003009 ORTHO05D001701 9.4e-14 81.3 85 41.2
VMungo0251G3565 Vigna mungo HOM05D003009 ORTHO05D001701 9.4e-14 81.3 94 43.6
PGR004G0870 Punica granatum HOM05D003009 ORTHO05D001701 1.2e-13 80.9 76 48.7
Glyma.13G178700 Glycine max HOM05D003009 ORTHO05D001701 1.6e-13 80.5 85 44.7
Rhsim13G0179100 Rhododendron simsii HOM05D003009 ORTHO05D001701 1.6e-13 80.5 78 44.9
Carub.0004s1545 Capsella rubella HOM05D003009 ORTHO05D001701 2.7e-13 79.7 75 46.7
Duzib160G0415 Durio zibethinus HOM05D003009 ORTHO05D001701 2.7e-13 79.7 74 47.3
Gohir.A06G128400 Gossypium hirsutum HOM05D003009 ORTHO05D001701 3.6e-13 79.3 74 48.6
Gorai.010G154300 Gossypium raimondii HOM05D003009 ORTHO05D001701 3.6e-13 79.3 92 44.6
Psat7g114200 Pisum sativum HOM05D003009 ORTHO05D001701 3.6e-13 79.3 128 38.3
Potri.011G053600 Populus trichocarpa HOM05D003009 ORTHO05D001701 4.7e-13 79.0 76 47.4
DCAR_004069 Daucus carota HOM05D003009 ORTHO05D001701 6.1e-13 78.6 78 44.9
MD05G1338000 Malus domestica HOM05D003009 ORTHO05D001701 6.1e-13 78.6 76 46.1
Prupe.7G084000 Prunus persica HOM05D003009 ORTHO05D001701 6.1e-13 78.6 75 46.7
Sabra11G0037400 Salix brachista HOM05D003009 ORTHO05D001701 6.1e-13 78.6 76 44.7
Dinv40571 Davidia involucrata HOM05D003009 ORTHO05D001701 8.0e-13 78.2 78 46.2
Medtr4g088735 Medicago truncatula HOM05D003009 ORTHO05D001701 1.0e-12 77.8 85 43.5
TPR.G33106 Trifolium pratense HOM05D003009 ORTHO05D001701 1.0e-12 77.8 115 38.3
TAR627G0353 Trochodendron aralioides HOM05D003009 ORTHO05D001701 1.0e-12 77.8 104 40.4
CSS0013482 Camellia sinensis var. sinensis HOM05D003009 ORTHO05D001701 1.4e-12 77.4 97 41.2
Lalb_Chr16g0383841 Lupinus albus HOM05D003009 ORTHO05D001701 1.4e-12 77.4 91 40.7
Sp4g16170 Schrenkiella parvula HOM05D003009 ORTHO05D001701 1.4e-12 77.4 100 40.0
Sopen02g022930 Solanum pennellii HOM05D003009 ORTHO05D001701 1.4e-12 77.4 83 49.4
Gohir.D06G132500 Gossypium hirsutum HOM05D003009 ORTHO05D001701 1.8e-12 77.0 92 43.5
Phvul.002G229200 Phaseolus vulgaris HOM05D003009 ORTHO05D001701 1.8e-12 77.0 92 42.4
BcaC02g07775 Brassica carinata HOM05D003009 ORTHO05D001701 2.3e-12 76.6 110 38.2
C04p63290 Brassica napus HOM05D003009 ORTHO05D001701 2.3e-12 76.6 110 38.2
BolC4t27803H Brassica oleracea HOM05D003009 ORTHO05D001701 2.3e-12 76.6 110 38.2
Lsat_1_v5_gn_4_53840 Lactuca sativa HOM05D003009 ORTHO05D001701 2.3e-12 76.6 90 43.3
Solyc02g078100.3 Solanum lycopersicum HOM05D003009 ORTHO05D001701 2.3e-12 76.6 75 50.7
PGSC0003DMG400029695 Solanum tuberosum HOM05D003009 ORTHO05D001701 2.3e-12 76.6 75 50.7
THA.LOC104820687 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 2.3e-12 76.6 74 47.3
CAN.G529.5 Capsicum annuum HOM05D003009 ORTHO05D001701 3.0e-12 76.3 70 51.4
Atru.chr10.1864 Acer truncatum HOM05D003009 ORTHO05D001701 4.0e-12 75.9 86 44.2
A04p25990 Brassica napus HOM05D003009 ORTHO05D001701 4.0e-12 75.9 100 37.0
BraA04t18102Z Brassica rapa HOM05D003009 ORTHO05D001701 4.0e-12 75.9 100 37.0
PSO832G2944 Papaver somniferum HOM05D003009 ORTHO05D001701 4.0e-12 75.9 79 44.3
CARHR127890 Cardamine hirsuta HOM05D003009 ORTHO05D001701 5.2e-12 75.5 83 42.2
CARHR128860 Cardamine hirsuta HOM05D003009 ORTHO05D001701 6.8e-12 75.1 90 41.1
TWI38G2351 Tripterygium wilfordii HOM05D003009 ORTHO05D001701 6.8e-12 75.1 82 46.3
DCAR_008035 Daucus carota HOM05D003009 ORTHO05D001701 8.8e-12 74.7 76 46.1
TPR.G23035 Trifolium pratense HOM05D003009 ORTHO05D001701 8.8e-12 74.7 114 37.7
MSTRG.7337 Avicennia marina HOM05D003009 ORTHO05D001701 1.5e-11 73.9 76 44.7
ECA234G4352 Erigeron canadensis HOM05D003009 ORTHO05D001701 1.5e-11 73.9 122 37.7
PSO210G4623 Papaver somniferum HOM05D003009 ORTHO05D001701 1.5e-11 73.9 79 41.8
EL10Ac8g20392 Beta vulgaris HOM05D003009 ORTHO05D001701 3.4e-11 72.8 76 40.8
Hund21219 Selenicereus undatus HOM05D003009 ORTHO05D001701 3.4e-11 72.8 78 43.6
unitig_22.g6231 Utricularia gibba HOM05D003009 ORTHO05D001701 3.4e-11 72.8 82 43.9
AT2G33790 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 4.4e-11 72.4 75 40.0
Eucgr.D00613 Eucalyptus grandis HOM05D003009 ORTHO05D001701 5.7e-11 72.0 109 35.8
MBI07_g30189_MAGBIO Magnolia biondii HOM05D002105 ORTHO05D001271 5.7e-11 72.0 75 42.7
Nitab4.5_0001652g0150 Nicotiana tabacum HOM05D003009 ORTHO05D001701 5.7e-11 72.0 75 48.0
Sc05g0007600 Simmondsia chinensis HOM05D003009 ORTHO05D001701 5.7e-11 72.0 76 39.5
Aa31sc225G30 Aethionema arabicum HOM05D003009 ORTHO05D001701 1.3e-10 70.9 76 46.1
AT1G28290 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 1.3e-10 70.9 75 44.0
CANSAT35G1820 Cannabis sativa HOM05D003009 ORTHO05D001701 1.3e-10 70.9 77 41.6
CARHR027780 Cardamine hirsuta HOM05D003009 ORTHO05D001701 1.3e-10 70.9 75 44.0
Eucgr.E03269 Eucalyptus grandis HOM05D003009 ORTHO05D001701 1.3e-10 70.9 86 41.9
AL1G41840 Arabidopsis lyrata HOM05D003009 ORTHO05D001701 1.7e-10 70.5 75 44.0
Lalb_Chr16g0383821 Lupinus albus HOM05D003009 ORTHO05D001701 1.7e-10 70.5 85 38.8
QL05p041024 Quercus lobata HOM05D003009 ORTHO05D001701 1.7e-10 70.5 74 41.9
TPR.G31168 Trifolium pratense HOM05D003009 ORTHO05D001701 1.7e-10 70.5 107 39.3
PGSC0003DMG400029700 Solanum tuberosum HOM05D003009 ORTHO05D001701 2.2e-10 70.1 81 40.7
ECA236G1979 Erigeron canadensis HOM05D003009 ORTHO05D001701 3.7e-10 69.3 78 41.0
HanXRQChr04g0124251 Helianthus annuus HOM05D003009 ORTHO05D001701 3.7e-10 69.3 78 41.0
Lsat_1_v5_gn_7_21560 Lactuca sativa HOM05D003009 ORTHO05D001701 3.7e-10 69.3 70 45.7
Nitab4.5_0001652g0100 Nicotiana tabacum HOM05D003009 ORTHO05D001701 3.7e-10 69.3 78 42.3
Ah.14g089490 Amaranthus hybridus HOM05D003009 ORTHO05D001701 4.9e-10 68.9 72 43.1
A07p11350 Brassica napus HOM05D003009 ORTHO05D001701 6.3e-10 68.6 75 41.3
C07p17130 Brassica napus HOM05D003009 ORTHO05D001701 6.3e-10 68.6 75 40.0
BraA07t28924Z Brassica rapa HOM05D003009 ORTHO05D001701 6.3e-10 68.6 75 41.3
Carub.0001s2673 Capsella rubella HOM05D003009 ORTHO05D001701 6.3e-10 68.6 75 41.3
CAN.G529.10 Capsicum annuum HOM05D003009 ORTHO05D001701 6.3e-10 68.6 75 42.7
Thhalv10008255m.g Eutrema salsugineum HOM05D003009 ORTHO05D001701 6.3e-10 68.6 75 45.3
Medtr4g046780 Medicago truncatula HOM05D003009 ORTHO05D001701 6.3e-10 68.6 98 38.8
AUR62017024 Chenopodium quinoa HOM05D003009 ORTHO05D001701 8.3e-10 68.2 78 37.2
BcaC06g35349 Brassica carinata HOM05D003009 ORTHO05D001701 1.1e-09 67.8 75 40.0
BolC7t42219H Brassica oleracea HOM05D003009 ORTHO05D001701 1.1e-09 67.8 75 40.0
Medtr2g097240 Medicago truncatula HOM05D003009 ORTHO05D001701 1.1e-09 67.8 124 37.1
Medtr4g088740 Medicago truncatula HOM05D003009 ORTHO05D001701 1.1e-09 67.8 85 42.4
Solyc02g078040.3 Solanum lycopersicum HOM05D003009 ORTHO05D001701 1.1e-09 67.8 75 41.3
Sopen02g022880 Solanum pennellii HOM05D003009 ORTHO05D001701 1.1e-09 67.8 78 41.0
AL4G29510 Arabidopsis lyrata HOM05D003009 ORTHO05D001701 1.4e-09 67.4 75 41.3
BraA09t39290Z Brassica rapa HOM05D003009 ORTHO05D001701 1.4e-09 67.4 75 41.3
THA.LOC104814217 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 1.4e-09 67.4 74 40.5
A09p37790 Brassica napus HOM05D003009 ORTHO05D001701 1.8e-09 67.0 75 41.3
C05p27140 Brassica napus HOM05D003009 ORTHO05D001701 1.8e-09 67.0 75 41.3
Medtr4g066680 Medicago truncatula HOM05D003009 ORTHO05D001701 1.8e-09 67.0 108 36.1
BcaC05g26833 Brassica carinata HOM05D003009 ORTHO05D001701 2.4e-09 66.6 75 41.3
BolC5t31428H Brassica oleracea HOM05D003009 ORTHO05D001701 2.4e-09 66.6 75 41.3
Gohir.D05G163801 Gossypium hirsutum HOM05D003009 ORTHO05D001701 2.4e-09 66.6 73 39.7
Gorai.009G168900 Gossypium raimondii HOM05D003009 ORTHO05D001701 2.4e-09 66.6 73 39.7
BcaB07g32438 Brassica carinata HOM05D003009 ORTHO05D001701 3.1e-09 66.2 75 40.0
Gohir.A05G161100 Gossypium hirsutum HOM05D003009 ORTHO05D001701 3.1e-09 66.2 73 39.7
Medtr1g055415 Medicago truncatula HOM05D003009 ORTHO05D001701 4.1e-09 65.9 88 40.9
Cc02_g13480 Coffea canephora HOM05D003009 ORTHO05D001701 5.4e-09 65.5 90 38.9
Oeu064785.1 Olea europaea HOM05D003009 ORTHO05D001701 7.0e-09 65.1 75 42.7
BcaB03g13938 Brassica carinata HOM05D003009 ORTHO05D001701 9.2e-09 64.7 75 38.7
Medtr4g046767 Medicago truncatula HOM05D003009 ORTHO05D001701 1.6e-08 63.9 84 40.5
Medtr5g047890 Medicago truncatula HOM05D003009 ORTHO05D001701 3.5e-08 62.8 82 41.5
Medtr3g012020 Medicago truncatula HOM05D003009 ORTHO05D001701 5.9e-08 62.0 82 41.5
Sp1g24490 Schrenkiella parvula HOM05D003009 ORTHO05D001701 5.9e-08 62.0 81 38.3
Nitab4.5_0001652g0140 Nicotiana tabacum HOM05D003009 ORTHO05D001701 5.0e-07 58.9 82 36.6
Peaxi162Scf00250g00058 Petunia axillaris HOM05D003009 ORTHO05D001701 5.0e-07 58.9 70 41.4
Peaxi162Scf74053g00003 Petunia axillaris HOM05D003009 ORTHO05D001701 5.0e-07 58.9 70 41.4
Ah.14g089500 Amaranthus hybridus HOM05D003009 ORTHO05D038262 1.9e-06 57.0 75 37.3
Aa31sc225G10 Aethionema arabicum HOM05D003009 ORTHO05D001701 2.5e-06 56.6 77 37.7
Sopen02g022890 Solanum pennellii HOM05D003009 ORTHO05D001701 4.3e-06 55.8 70 40.0
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 7.3e-06 55.1 72 38.9
PSO675G7840 Papaver somniferum HOM05D003009 ORTHO05D001701 7.3e-06 55.1 89 33.7
PGSC0003DMG400029699 Solanum tuberosum HOM05D003009 ORTHO05D001701 7.3e-06 55.1 103 32.0
Solyc02g078050.4 Solanum lycopersicum HOM05D003009 ORTHO05D001701 9.5e-06 54.7 70 40.0


User provided reference genes

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