Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3334 Punica granatum HOM05D002500 ORTHO05D002587 1.4e-78 296.2 146 100.0
PGR042G0460 Punica granatum HOM05D002500 ORTHO05D002587 3.2e-43 178.7 122 77.9
Haze_02947 Corylus avellana HOM05D002500 ORTHO05D002587 5.3e-22 108.2 125 48.0
Cfa010988 Carpinus fangiana HOM05D002500 ORTHO05D002587 5.9e-21 104.8 118 47.5
Peaxi162Scf00062g00710 Petunia axillaris HOM05D002500 ORTHO05D002587 1.0e-20 104.0 115 42.6
Eucgr.E01726 Eucalyptus grandis HOM05D002500 ORTHO05D002587 1.3e-20 103.6 119 43.7
Solyc12g099860.2 Solanum lycopersicum HOM05D002500 ORTHO05D002587 1.3e-20 103.6 114 43.9
CAN.G1565.2 Capsicum annuum HOM05D002500 ORTHO05D002587 2.2e-20 102.8 114 43.0
CiPaw.13G018800 Carya illinoinensis HOM05D002500 ORTHO05D002587 6.5e-20 101.3 117 46.2
PGSC0003DMG400004648 Solanum tuberosum HOM05D002500 ORTHO05D002587 6.5e-20 101.3 117 42.7
MSTRG.4975 Avicennia marina HOM05D002500 ORTHO05D002587 9.4e-19 97.4 113 44.2
CAN.G674.6 Capsicum annuum HOM05D002500 ORTHO05D002587 1.6e-18 96.7 114 42.1
Nn6g33628 Nelumbo nucifera HOM05D002500 ORTHO05D002587 2.1e-18 96.3 116 43.1
GSVIVG01013826001 Vitis vinifera HOM05D002500 ORTHO05D002587 2.1e-18 96.3 115 48.7
Migut.N01699 Erythranthe guttata HOM05D002500 ORTHO05D002587 2.7e-18 95.9 118 43.2
CAN.G575.79 Capsicum annuum HOM05D002500 ORTHO05D002587 3.6e-18 95.5 113 43.4
Dinv43561 Davidia involucrata HOM05D002500 ORTHO05D002587 3.6e-18 95.5 118 43.2
Peaxi162Scf00062g00615 Petunia axillaris HOM05D002500 ORTHO05D002587 4.7e-18 95.1 122 37.7
TAR636G0004 Trochodendron aralioides HOM05D002500 ORTHO05D002587 8.0e-18 94.4 116 41.4
CAN.G575.136 Capsicum annuum HOM05D002500 ORTHO05D002587 2.3e-17 92.8 114 40.4
HanXRQChr01g0023411 Helianthus annuus HOM05D002500 ORTHO05D002587 2.3e-17 92.8 128 38.3
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 3.9e-17 92.0 113 40.7
Thecc.10G091000 Theobroma cacao HOM05D002500 ORTHO05D002587 8.8e-17 90.9 125 42.4
CSS0028059 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 2.0e-16 89.7 118 42.4
RcHm_v2.0_Chr1g0341331 Rosa chinensis HOM05D002500 ORTHO05D002587 3.3e-16 89.0 117 42.7
Hma1.2p1_0601F.1_g187310 Hydrangea macrophylla HOM05D002500 ORTHO05D002587 4.4e-16 88.6 116 41.4
Thecc.10G091800 Theobroma cacao HOM05D002500 ORTHO05D002587 4.4e-16 88.6 125 40.8
FAN06G4633 Fragaria x ananassa HOM05D002500 ORTHO05D002587 9.7e-16 87.4 117 44.4
Manes.11G141400 Manihot esculenta HOM05D002500 ORTHO05D002587 9.7e-16 87.4 113 41.6
FAN03G1706 Fragaria x ananassa HOM05D002500 ORTHO05D002587 1.7e-15 86.7 117 43.6
Cc02_g26080 Coffea canephora HOM05D002500 ORTHO05D002587 2.2e-15 86.3 119 37.8
FAN01G2889 Fragaria x ananassa HOM05D002500 ORTHO05D002587 2.2e-15 86.3 116 44.0
FvH4_7g07960 Fragaria vesca HOM05D002500 ORTHO05D002587 2.8e-15 85.9 117 43.6
FAN10G4147 Fragaria x ananassa HOM05D002500 ORTHO05D002587 2.8e-15 85.9 116 44.0
Lsat_1_v5_gn_1_84880 Lactuca sativa HOM05D002500 ORTHO05D002587 3.7e-15 85.5 116 38.8
SGA_v2.0_scaffold95G28739 Striga asiatica HOM05D002500 ORTHO05D002587 3.7e-15 85.5 110 40.0
Ciclev10015589m.g Citrus clementina HOM05D002500 ORTHO05D002587 4.8e-15 85.1 124 40.3
SGA_v2.0_scaffold95G28737 Striga asiatica HOM05D002500 ORTHO05D002587 4.8e-15 85.1 110 39.1
MD02G1229500 Malus domestica HOM05D002500 ORTHO05D002587 6.3e-15 84.7 116 38.8
Aqoxy3G02457 Aquilegia oxysepala HOM05D002500 ORTHO05D002587 2.4e-14 82.8 118 39.8
Actinidia30971 Actinidia chinensis HOM05D002500 ORTHO05D002587 3.1e-14 82.4 116 38.8
Sabra12G0059800 Salix brachista HOM05D002500 ORTHO05D002587 3.1e-14 82.4 98 44.9
Gorai.004G108500 Gossypium raimondii HOM05D002500 ORTHO05D002587 7.0e-14 81.3 123 40.7
Oeu013053.1 Olea europaea HOM05D002500 ORTHO05D002587 7.0e-14 81.3 64 53.1
CsaV3_2G026130 Cucumis sativus L. HOM05D002500 ORTHO05D002587 9.1e-14 80.9 116 39.7
DCAR_025015 Daucus carota HOM05D002500 ORTHO05D002587 9.1e-14 80.9 117 39.3
MELO3C010805.2 Cucumis melo HOM05D002500 ORTHO05D002587 1.2e-13 80.5 116 39.7
COL.COLO4_20833 Corchorus olitorius HOM05D002500 ORTHO05D002587 4.5e-13 78.6 114 42.1
Nitab4.5_0004725g0040 Nicotiana tabacum HOM05D002500 ORTHO05D002587 5.9e-13 78.2 97 41.2
CANSAT54G0655 Cannabis sativa HOM05D002500 ORTHO05D002587 7.7e-13 77.8 117 37.6
ECA248G3744 Erigeron canadensis HOM05D002500 ORTHO05D002587 7.7e-13 77.8 64 53.1
Gohir.D08G100600 Gossypium hirsutum HOM05D002500 ORTHO05D002587 7.7e-13 77.8 123 39.8
ClCG08G016480 Citrullus lanatus HOM05D002500 ORTHO05D002587 1.3e-12 77.0 132 36.4
Potri.012G083100 Populus trichocarpa HOM05D002500 ORTHO05D002587 1.3e-12 77.0 109 42.2
Thhalv10029474m.g Eutrema salsugineum HOM05D002500 ORTHO05D002587 1.7e-12 76.6 111 40.5
Sed0020597 Sechium edule HOM05D002500 ORTHO05D002587 2.9e-12 75.9 115 39.1
Rhsim07G0042500 Rhododendron simsii HOM05D002500 ORTHO05D002587 3.8e-12 75.5 118 35.6
Atru.chr5.12 Acer truncatum HOM05D002500 ORTHO05D002587 6.5e-12 74.7 117 36.8
Atru.chr7.1787 Acer truncatum HOM05D002500 ORTHO05D002587 6.5e-12 74.7 117 36.8
Sc23g0003800 Simmondsia chinensis HOM05D002500 ORTHO05D002587 8.5e-12 74.3 125 39.2
AT4G10650 Arabidopsis thaliana HOM05D002500 ORTHO05D002587 1.1e-11 73.9 119 41.2
BcaB01g01496 Brassica carinata HOM05D002500 ORTHO05D002587 1.1e-11 73.9 111 39.6
CARHR255920 Cardamine hirsuta HOM05D002500 ORTHO05D002587 2.5e-11 72.8 119 37.0
CANSAT54G2161 Cannabis sativa HOM05D002500 ORTHO05D002587 3.2e-11 72.4 120 36.7
Carub.0006s2946 Capsella rubella HOM05D002500 ORTHO05D002587 3.2e-11 72.4 114 41.2
A09p28580 Brassica napus HOM05D002500 ORTHO05D002587 7.2e-11 71.2 111 39.6
BraA09t38419Z Brassica rapa HOM05D002500 ORTHO05D002587 7.2e-11 71.2 111 39.6
AL6G44730 Arabidopsis lyrata HOM05D002500 ORTHO05D002587 1.6e-10 70.1 114 40.4
BcaC04g21054 Brassica carinata HOM05D002500 ORTHO05D002587 1.6e-10 70.1 111 38.7
C09p36200 Brassica napus HOM05D002500 ORTHO05D002587 1.6e-10 70.1 111 38.7
BolC9t56458H Brassica oleracea HOM05D002500 ORTHO05D002587 1.6e-10 70.1 111 38.7
Phvul.005G041400 Phaseolus vulgaris HOM05D002500 ORTHO05D002587 1.6e-10 70.1 117 35.0
Glyma.08G157500 Glycine max HOM05D002500 ORTHO05D002587 3.6e-10 68.9 118 36.4
EL10Ac3g05061 Beta vulgaris HOM05D002500 ORTHO05D002587 8.0e-10 67.8 66 48.5
vmacro13558 Vaccinium macrocarpon HOM05D002500 ORTHO05D002587 8.0e-10 67.8 64 43.8
Aa31LG9G11350 Aethionema arabicum HOM05D002500 ORTHO05D002587 1.8e-09 66.6 111 37.8
AUR62002077 Chenopodium quinoa HOM05D002500 ORTHO05D002587 1.8e-09 66.6 94 40.4
Cpa.g.sc136.65 Carica papaya HOM05D002500 ORTHO05D002587 3.0e-09 65.9 120 35.0
Gohir.A08G089400 Gossypium hirsutum HOM05D002500 ORTHO05D002587 4.0e-09 65.5 122 35.2
Lj9A546G12 Lonicera japonica HOM05D002500 ORTHO05D002587 4.0e-09 65.5 180 28.3
Hund09886 Selenicereus undatus HOM05D002500 ORTHO05D002587 5.2e-09 65.1 126 33.3
AUR62028194 Chenopodium quinoa HOM05D002500 ORTHO05D002587 6.7e-09 64.7 66 47.0
VMungo1080G0143 Vigna mungo HOM05D002500 ORTHO05D002587 8.8e-09 64.3 117 35.0
Lalb_Chr20g0108191 Lupinus albus HOM05D002500 ORTHO05D002587 1.5e-08 63.5 65 47.7
SHI12397 Sapria himalayana HOM05D002500 ORTHO05D002587 2.0e-08 63.2 88 42.0
TWI59G0576 Tripterygium wilfordii HOM05D002500 ORTHO05D002587 2.0e-08 63.2 118 33.1
ATR0049G009 Amborella trichopoda HOM05D002500 ORTHO05D002587 4.4e-08 62.0 64 39.1
A05p02400 Brassica napus HOM05D002500 ORTHO05D002587 4.4e-08 62.0 111 36.0
BolC4t21925H Brassica oleracea HOM05D002500 ORTHO05D002587 4.4e-08 62.0 111 36.0
BraA05t19234Z Brassica rapa HOM05D002500 ORTHO05D002587 4.4e-08 62.0 111 36.0
CDE12G0181 Ceratophyllum demersum HOM05D002500 ORTHO05D002587 4.4e-08 62.0 93 35.5
Manes.09G019500 Manihot esculenta HOM05D002500 ORTHO05D002587 4.4e-08 62.0 106 38.7
BcaC02g12789 Brassica carinata HOM05D002500 ORTHO05D002587 5.7e-08 61.6 64 42.2
C04p02850 Brassica napus HOM05D002500 ORTHO05D002587 5.7e-08 61.6 111 36.0
AUR62026057 Chenopodium quinoa HOM05D002500 ORTHO05D002587 5.7e-08 61.6 106 35.8
TWI77G0179 Tripterygium wilfordii HOM05D002500 ORTHO05D002587 5.7e-08 61.6 105 34.3
Aa31LG1G23690 Aethionema arabicum HOM05D002500 ORTHO05D002587 7.5e-08 61.2 111 36.0
AUR62024466 Chenopodium quinoa HOM05D002500 ORTHO05D002587 7.5e-08 61.2 106 35.8
Thhalv10016807m.g Eutrema salsugineum HOM05D002500 ORTHO05D002587 7.5e-08 61.2 123 34.1
Peaxi162Scf00130g00422 Petunia axillaris HOM05D002500 ORTHO05D002587 7.5e-08 61.2 105 35.2
THA.LOC104815297 Tarenaya hassleriana HOM05D002500 ORTHO05D002587 9.7e-08 60.8 111 38.7
SHI46583 Sapria himalayana HOM05D002500 ORTHO05D002587 1.3e-07 60.5 95 31.6
SHI46712 Sapria himalayana HOM05D002500 ORTHO05D002587 1.3e-07 60.5 95 31.6
Ah.04g156390 Amaranthus hybridus HOM05D002500 ORTHO05D002587 1.7e-07 60.1 126 37.3
Ah.04g156590 Amaranthus hybridus HOM05D002500 ORTHO05D002587 1.7e-07 60.1 126 37.3
EL10Ac3g07104 Beta vulgaris HOM05D002500 ORTHO05D002587 1.7e-07 60.1 76 38.2
Sp4g23910 Schrenkiella parvula HOM05D002500 ORTHO05D002587 1.7e-07 60.1 123 34.1
GSVIVG01033255001 Vitis vinifera HOM05D002500 ORTHO05D002587 1.7e-07 60.1 109 36.7
CiPaw.10G027900 Carya illinoinensis HOM05D002500 ORTHO05D002587 2.2e-07 59.7 109 35.8
HanXRQChr01g0028391 Helianthus annuus HOM05D002500 ORTHO05D002587 2.2e-07 59.7 76 39.5
Os10g0572000 Oryza sativa ssp. japonica HOM05D002500 ORTHO05D002587 2.2e-07 59.7 125 34.4
Sc19g0006570 Simmondsia chinensis HOM05D002500 ORTHO05D002587 2.8e-07 59.3 76 40.8
Lj1g0024295 Lotus japonicus HOM05D002500 ORTHO05D002587 3.7e-07 58.9 109 35.8
SalBow6G2571 Salvia bowleyana HOM05D002500 ORTHO05D002587 3.7e-07 58.9 64 43.8
Atru.chr1.1133 Acer truncatum HOM05D002500 ORTHO05D002587 4.8e-07 58.5 106 34.9
AL4G39820 Arabidopsis lyrata HOM05D002500 ORTHO05D002587 4.8e-07 58.5 123 33.3
AL4G39970 Arabidopsis lyrata HOM05D002500 ORTHO05D002587 4.8e-07 58.5 123 33.3
AT2G41670 Arabidopsis thaliana HOM05D002500 ORTHO05D002587 4.8e-07 58.5 123 33.3
Gorai.002G226100 Gossypium raimondii HOM05D002500 ORTHO05D002587 4.8e-07 58.5 109 34.9
Rhsim03G0027600 Rhododendron simsii HOM05D002500 ORTHO05D002587 4.8e-07 58.5 97 36.1
SalBow6G5828 Salvia bowleyana HOM05D002500 ORTHO05D002587 4.8e-07 58.5 64 43.8
Hund24695 Selenicereus undatus HOM05D002500 ORTHO05D002587 4.8e-07 58.5 142 33.1
TAR369G1084 Trochodendron aralioides HOM05D002500 ORTHO05D002587 4.8e-07 58.5 106 35.8
Ciclev10005755m.g Citrus clementina HOM05D002500 ORTHO05D002587 6.3e-07 58.2 105 34.3
Solyc10g080070.3 Solanum lycopersicum HOM05D002500 ORTHO05D002587 6.3e-07 58.2 94 37.2
Ah.04g151560 Amaranthus hybridus HOM05D002500 ORTHO05D002587 8.2e-07 57.8 118 34.7
arahy.Tifrunner.gnm1.ann1.G31LB0 Arachis hypogaea HOM05D002500 ORTHO05D002587 8.2e-07 57.8 109 34.9
arahy.Tifrunner.gnm1.ann1.P5C9KT Arachis hypogaea HOM05D002500 ORTHO05D002587 8.2e-07 57.8 109 34.9
Ca_08442_v3 Cicer arietinum L. HOM05D002500 ORTHO05D002587 8.2e-07 57.8 106 35.8
HanXRQChr10g0300661 Helianthus annuus HOM05D002500 ORTHO05D002587 8.2e-07 57.8 105 33.3
Lsat_1_v5_gn_9_30741 Lactuca sativa HOM05D002500 ORTHO05D002587 8.2e-07 57.8 76 38.2
SGA_v2.0_scaffold94G28489 Striga asiatica HOM05D002500 ORTHO05D002587 8.2e-07 57.8 118 35.6
Thecc.05G149900 Theobroma cacao HOM05D002500 ORTHO05D002587 8.2e-07 57.8 75 36.0
vmacro07832 Vaccinium macrocarpon HOM05D002500 ORTHO05D002587 8.2e-07 57.8 106 35.8
Actinidia09314 Actinidia chinensis HOM05D002500 ORTHO05D002587 1.1e-06 57.4 109 34.9
Carub.0004s2394 Capsella rubella HOM05D002500 ORTHO05D002587 1.1e-06 57.4 123 32.5
Cpa.g.c32367 Carica papaya HOM05D002500 ORTHO05D002587 1.1e-06 57.4 97 36.1
Gohir.A01G192700 Gossypium hirsutum HOM05D002500 ORTHO05D002587 1.4e-06 57.0 109 33.9
Lj3g0013912 Lotus japonicus HOM05D002500 ORTHO05D002587 1.4e-06 57.0 122 33.6
Lj6g0002970 Lotus japonicus HOM05D002500 ORTHO05D002587 1.4e-06 57.0 122 33.6
vmacro23151 Vaccinium macrocarpon HOM05D002500 ORTHO05D002587 1.4e-06 57.0 122 33.6
CARHR136750 Cardamine hirsuta HOM05D002500 ORTHO05D002587 1.8e-06 56.6 111 33.3
Migut.K00093 Erythranthe guttata HOM05D002500 ORTHO05D002587 1.8e-06 56.6 106 34.9
SalBow7G1667 Salvia bowleyana HOM05D002500 ORTHO05D002587 1.8e-06 56.6 94 37.2
Sopen10g030680 Solanum pennellii HOM05D002500 ORTHO05D002587 1.8e-06 56.6 114 34.2
Cc02_g26060 Coffea canephora HOM05D002500 ORTHO05D002587 2.4e-06 56.2 92 37.0
Duzib106G0575 Durio zibethinus HOM05D002500 ORTHO05D002587 2.4e-06 56.2 103 35.0
MD14G1074700 Malus domestica HOM05D002500 ORTHO05D002587 2.4e-06 56.2 109 34.9
Nitab4.5_0000364g0070 Nicotiana tabacum HOM05D002500 ORTHO05D002587 2.4e-06 56.2 110 35.5
Sabra06G0034200 Salix brachista HOM05D002500 ORTHO05D002587 2.4e-06 56.2 97 36.1
Solyc04g016050.3 Solanum lycopersicum HOM05D002500 ORTHO05D002587 2.4e-06 56.2 64 40.6
PGSC0003DMG400023726 Solanum tuberosum HOM05D002500 ORTHO05D002587 2.4e-06 56.2 114 34.2
Eucgr.K01783 Eucalyptus grandis HOM05D002500 ORTHO05D002587 3.1e-06 55.8 113 33.6
Potri.006G048900 Populus trichocarpa HOM05D002500 ORTHO05D002587 3.1e-06 55.8 109 34.9
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 4.1e-06 55.5 106 34.0
Dinv39622 Davidia involucrata HOM05D002500 ORTHO05D002587 4.1e-06 55.5 106 34.0
Eucgr.K01761 Eucalyptus grandis HOM05D002500 ORTHO05D002587 4.1e-06 55.5 113 34.5
Eucgr.K01766 Eucalyptus grandis HOM05D002500 ORTHO05D002587 4.1e-06 55.5 113 34.5
Eucgr.K02006 Eucalyptus grandis HOM05D002500 ORTHO05D002587 4.1e-06 55.5 113 34.5
Oeu008165.1 Olea europaea HOM05D002500 ORTHO05D002587 4.1e-06 55.5 137 32.1
Aqoxy5G03596 Aquilegia oxysepala HOM05D002500 ORTHO05D002587 5.3e-06 55.1 109 34.9
ECA247G3065 Erigeron canadensis HOM05D002500 ORTHO05D002587 5.3e-06 55.1 122 33.6
SMO164G0173 Selaginella moellendorffii HOM05D002500 ORTHO05D002587 5.3e-06 55.1 65 40.0
ATR0782G096 Amborella trichopoda HOM05D002500 ORTHO05D002587 7.0e-06 54.7 118 33.1
Eucgr.K01722 Eucalyptus grandis HOM05D002500 ORTHO05D002587 7.0e-06 54.7 100 37.0
CsaV3_4G011840 Cucumis sativus L. HOM05D001499 ORTHO05D001560 9.1e-06 54.3 122 30.3
Medtr7g091320 Medicago truncatula HOM05D002500 ORTHO05D002587 9.1e-06 54.3 106 34.0
TPR.G18252 Trifolium pratense HOM05D002500 ORTHO05D002587 9.1e-06 54.3 88 36.4


User provided reference genes

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