Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 2.3e-162 575.5 283 100.0
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 2.2e-101 372.9 285 67.4
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 2.9e-101 372.5 280 69.3
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 8.5e-101 370.9 285 67.4
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 1.2e-99 367.1 292 66.1
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 8.8e-98 360.9 284 67.3
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 1.2e-97 360.5 287 64.8
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 1.2e-97 360.5 281 67.3
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 1.2e-97 360.5 287 66.9
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 1.3e-96 357.1 293 63.1
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 1.7e-96 356.7 294 64.6
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 2.2e-96 356.3 278 65.8
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 2.8e-96 355.9 289 64.0
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 3.7e-96 355.5 287 63.8
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 4.8e-96 355.1 293 63.1
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 1.1e-95 354.0 293 62.8
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 1.8e-95 353.2 293 62.5
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 1.8e-95 353.2 284 65.8
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 2.4e-95 352.8 282 65.2
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 9.1e-95 350.9 280 66.1
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 1.6e-94 350.1 279 64.9
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 2.0e-94 349.7 289 63.0
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 2.0e-94 349.7 279 65.9
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 7.7e-94 347.8 293 62.8
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 1.3e-93 347.1 293 62.8
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 1.7e-93 346.7 277 65.0
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 1.7e-93 346.7 277 65.0
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 1.7e-93 346.7 277 65.0
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 2.3e-93 346.3 277 64.6
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 2.9e-93 345.9 280 65.4
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 2.9e-93 345.9 284 63.7
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 6.5e-93 344.7 272 66.9
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 8.6e-93 344.4 286 66.1
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.1e-92 344.0 289 62.6
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 1.1e-92 344.0 291 62.9
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 1.5e-92 343.6 290 64.5
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 2.5e-92 342.8 301 61.5
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 3.3e-92 342.4 286 62.2
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 5.5e-92 341.7 290 62.4
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 7.2e-92 341.3 319 57.7
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 1.6e-91 340.1 291 62.2
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 2.8e-91 339.3 280 65.0
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 3.6e-91 339.0 292 61.3
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 4.7e-91 338.6 281 63.0
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 4.7e-91 338.6 285 62.1
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 1.0e-90 337.4 219 74.0
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 1.0e-90 337.4 282 62.4
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 1.4e-90 337.0 183 83.6
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 3.0e-90 335.9 288 60.4
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 4.0e-90 335.5 297 62.6
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 1.2e-89 334.0 297 60.9
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 1.5e-89 333.6 288 61.1
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 1.5e-89 333.6 288 61.8
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 9.8e-89 330.9 288 60.8
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 1.3e-88 330.5 285 61.1
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 1.7e-88 330.1 287 61.3
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 2.2e-88 329.7 298 56.7
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 4.9e-88 328.6 290 59.7
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 3.1e-87 325.9 271 62.7
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 4.1e-87 325.5 305 60.0
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 4.1e-87 325.5 285 60.7
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 4.1e-87 325.5 312 57.4
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 1.2e-86 323.9 290 58.6
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 1.0e-85 320.9 278 60.8
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 1.3e-85 320.5 274 58.0
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 2.3e-85 319.7 247 64.0
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 1.5e-84 317.0 280 60.7
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 2.5e-84 316.2 278 58.6
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 5.6e-84 315.1 237 67.5
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 7.3e-84 314.7 194 75.8
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 3.6e-83 312.4 223 68.6
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 3.6e-83 312.4 289 57.8
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 2.0e-81 306.6 236 66.1
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 5.8e-81 305.1 283 56.5
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 7.5e-81 304.7 347 53.3
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 2.2e-80 303.1 280 57.5
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 7.8e-78 294.7 293 55.3
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 7.8e-78 294.7 167 79.6
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 1.7e-77 293.5 278 57.2
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 3.0e-77 292.7 265 57.0
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 1.1e-76 290.8 317 52.1
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 2.1e-75 286.6 166 78.9
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 1.9e-71 273.5 165 77.6
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 3.2e-71 272.7 161 79.5
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 1.2e-70 270.8 290 54.1
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 1.2e-70 270.8 156 79.5
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 7.8e-70 268.1 172 70.9
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 7.3e-68 261.5 284 51.8
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 3.1e-66 256.1 246 58.9
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 3.4e-65 252.7 156 75.6
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 4.9e-64 248.8 293 49.8
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 4.6e-62 242.3 148 76.4
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 2.1e-59 233.4 166 65.7
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 2.8e-59 233.0 216 61.1
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 4.0e-58 229.2 244 53.3
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 2.0e-57 226.9 188 56.4
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 9.9e-57 224.6 189 53.4
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 4.9e-56 222.2 188 55.3
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 1.2e-54 217.6 238 47.5
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 2.7e-54 216.5 240 54.2
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 1.7e-48 197.2 187 49.2
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 4.9e-48 195.7 218 51.4
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 2.7e-46 189.9 245 49.8
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 6.6e-45 185.3 293 41.6
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 6.2e-43 178.7 166 54.8
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 8.1e-43 178.3 284 41.9
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 4.0e-42 176.0 339 36.9
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 2.0e-41 173.7 204 47.1
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 3.9e-37 159.5 181 46.4
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 2.8e-35 153.3 112 64.3
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 3.1e-34 149.8 92 72.8
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 5.5e-31 139.0 176 39.8
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 5.5e-23 112.5 66 77.3
Zm00001eb300960 Zea mays HOM05D006942 ORTHO05D008737 4.5e-09 66.2 44 72.7
Pp3s30_1160 Physcomitrium patens HOM05D006942 ORTHO05D317230 1.9e-07 60.8 62 41.9
CSS0026826 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 5.5e-07 59.3 50 56.0


User provided reference genes

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