Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 1.0e-274 949.5 503 100.0
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 2.3e-88 330.5 375 55.5
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 4.0e-77 293.1 383 49.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 5.1e-72 276.2 387 48.3
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.1e-71 275.0 407 47.2
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 4.0e-69 266.5 386 47.2
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 7.6e-68 262.3 376 46.8
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.7e-67 261.2 396 45.5
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 6.4e-67 259.2 370 45.7
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 8.4e-67 258.8 370 45.1
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 8.4e-67 258.8 365 47.4
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.1e-66 258.5 371 45.8
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.9e-66 257.7 404 45.0
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 2.1e-65 254.2 370 45.1
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 2.7e-65 253.8 378 45.8
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 4.6e-65 253.1 365 46.6
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 6.0e-65 252.7 386 45.6
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 7.9e-65 252.3 369 46.6
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 7.9e-65 252.3 404 44.6
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.0e-64 251.9 384 45.6
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.3e-64 251.5 383 46.0
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.3e-64 251.5 394 44.2
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 1.8e-64 251.1 434 42.4
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.3e-64 250.8 402 42.3
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 3.0e-64 250.4 205 66.3
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 3.9e-64 250.0 363 47.1
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.1e-63 248.4 404 43.1
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.1e-63 248.4 389 45.2
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.5e-63 248.1 385 45.5
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.5e-63 248.1 399 43.4
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 2.5e-63 247.3 212 62.3
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.5e-63 247.3 397 43.3
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 4.3e-63 246.5 372 44.9
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.6e-62 244.6 403 42.4
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.6e-62 244.6 369 43.6
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 2.8e-62 243.8 371 44.5
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 1.1e-61 241.9 368 44.3
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 1.8e-61 241.1 410 41.5
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 6.9e-61 239.2 373 44.0
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.2e-60 238.4 417 40.3
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.0e-60 237.7 382 43.5
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.3e-59 235.0 402 41.8
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 1.7e-59 234.6 370 44.3
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.2e-59 234.2 398 45.7
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.2e-59 234.2 423 39.7
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 4.9e-59 233.0 388 41.2
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 8.4e-59 232.3 212 58.5
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 1.1e-58 231.9 289 47.1
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.1e-58 231.9 415 39.3
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.1e-58 231.9 370 44.3
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 4.2e-58 229.9 379 42.0
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 1.2e-57 228.4 578 34.8
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 1.2e-57 228.4 256 52.7
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.2e-57 228.4 436 42.4
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 2.7e-57 227.3 397 40.3
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 3.0e-56 223.8 373 42.6
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 3.0e-56 223.8 261 50.2
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 5.1e-56 223.0 199 58.8
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 5.1e-56 223.0 363 42.1
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 6.7e-56 222.6 400 42.2
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 1.5e-55 221.5 310 46.1
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.9e-55 221.1 375 41.3
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 9.6e-55 218.8 364 42.3
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 9.6e-55 218.8 329 42.9
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 2.8e-54 217.2 384 41.1
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 4.8e-54 216.5 210 55.7
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 1.8e-53 214.5 265 48.3
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.8e-53 214.5 411 38.7
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 6.9e-53 212.6 409 39.6
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 6.9e-53 212.6 218 56.4
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 1.5e-52 211.5 221 53.8
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 2.6e-52 210.7 335 43.9
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 4.5e-52 209.9 383 39.7
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 1.7e-51 208.0 372 38.7
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 1.7e-51 208.0 265 47.5
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 6.5e-51 206.1 402 39.1
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.4e-50 204.9 265 47.9
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 4.2e-50 203.4 382 40.8
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 7.1e-50 202.6 159 63.5
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.6e-49 201.4 237 51.5
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 3.5e-49 200.3 362 41.4
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 8.7e-48 195.7 209 54.5
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 9.7e-47 192.2 365 39.2
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 4.8e-46 189.9 232 49.6
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 4.8e-46 189.9 232 49.6
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 2.6e-44 184.1 503 32.8
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.5e-44 183.3 382 39.3
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 2.9e-43 180.6 425 35.5
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 3.8e-43 180.3 363 38.3
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 8.5e-43 179.1 369 38.2
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 7.2e-42 176.0 382 38.2
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 1.2e-41 175.3 303 43.6
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 2.1e-41 174.5 171 56.1
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.7e-41 174.1 156 60.9
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 1.8e-40 171.4 211 48.3
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 2.5e-39 167.5 133 60.9
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 2.8e-38 164.1 206 48.5
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 4.1e-37 160.2 315 36.5
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.2e-36 158.7 368 35.3
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 5.0e-35 153.3 180 48.3
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 5.0e-35 153.3 180 48.3
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 1.1e-34 152.1 180 48.9
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 7.2e-34 149.4 354 33.6
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 3.0e-32 144.1 421 32.1
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 6.7e-32 142.9 266 39.1
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 2.6e-31 141.0 274 38.3
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 9.7e-31 139.0 270 42.2
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.4e-29 135.2 273 36.6
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.4e-29 134.4 194 41.8
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 2.9e-27 127.5 132 49.2
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 8.5e-27 125.9 147 53.1
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.2e-26 124.0 220 42.3
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.3e-24 117.9 133 46.6
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 5.2e-24 116.7 119 49.6
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.4e-23 113.6 248 40.3
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 4.8e-22 110.2 109 49.5
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.4e-21 108.6 77 67.5
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 2.0e-20 104.8 287 31.7
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 5.9e-20 103.2 95 58.9
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 1.7e-19 101.7 162 42.6
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.1e-18 99.0 160 46.9
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.5e-18 96.7 82 61.0
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 1.1e-13 82.4 68 52.9
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 2.4e-13 81.3 108 40.7
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 5.3e-13 80.1 239 31.4
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 1.2e-12 79.0 176 34.7
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 2.0e-12 78.2 178 32.0
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 1.3e-11 75.5 45 68.9
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 1.9e-10 71.6 126 34.9
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 4.2e-10 70.5 180 32.8
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.5e-10 70.1 115 36.5
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 2.3e-08 64.7 68 50.0
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 6.8e-08 63.2 245 33.1
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 2.0e-07 61.6 86 38.4
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 2.0e-07 61.6 57 54.4
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 3.4e-07 60.8 56 53.6
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 4.4e-07 60.5 83 38.6
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 4.4e-07 60.5 43 67.4
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 2.8e-06 57.8 83 37.3
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 6.3e-06 56.6 83 36.1


User provided reference genes

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