Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 3.2e-62 241.5 117 100.0
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 1.6e-56 222.6 116 86.2
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.7e-55 219.2 117 84.6
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 2.2e-55 218.8 117 86.3
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 2.9e-55 218.4 116 84.5
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 3.8e-55 218.0 117 85.5
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 5.0e-55 217.6 117 84.6
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 8.5e-55 216.9 116 85.3
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.1e-54 216.5 115 83.5
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.5e-54 216.1 116 82.8
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.9e-54 215.7 116 81.9
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.9e-54 215.7 116 82.8
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.9e-54 215.7 116 82.8
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 2.5e-54 215.3 116 85.3
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 3.2e-54 214.9 116 82.8
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 4.2e-54 214.5 117 83.8
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 4.2e-54 214.5 116 82.8
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 5.5e-54 214.2 116 82.8
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.5e-54 214.2 116 82.8
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 7.2e-54 213.8 116 83.6
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 9.4e-54 213.4 117 82.9
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 9.4e-54 213.4 117 82.9
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 9.4e-54 213.4 117 82.9
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 9.4e-54 213.4 117 82.1
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.2e-53 213.0 116 83.6
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 2.7e-53 211.8 116 81.9
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 2.7e-53 211.8 116 81.0
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 6.1e-53 210.7 116 81.0
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.1e-53 210.7 116 81.0
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 6.1e-53 210.7 117 81.2
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 6.1e-53 210.7 117 82.1
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 6.1e-53 210.7 117 82.1
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 6.1e-53 210.7 117 82.1
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 8.0e-53 210.3 115 81.7
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 8.0e-53 210.3 115 83.5
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 8.0e-53 210.3 117 81.2
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 1.0e-52 209.9 116 80.2
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.8e-52 209.1 116 81.0
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.8e-52 209.1 117 80.3
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 1.8e-52 209.1 118 82.2
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.3e-52 208.8 115 82.6
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 3.0e-52 208.4 117 82.1
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 3.0e-52 208.4 117 83.8
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 3.0e-52 208.4 117 83.8
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 4.0e-52 208.0 115 81.7
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.2e-52 207.6 117 81.2
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 5.2e-52 207.6 114 80.7
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 6.7e-52 207.2 117 82.9
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 6.7e-52 207.2 115 80.9
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.2e-51 206.5 114 85.1
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.5e-51 206.1 117 77.8
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 2.0e-51 205.7 117 76.9
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 2.0e-51 205.7 117 78.6
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.6e-51 205.3 114 85.1
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 4.4e-51 204.5 116 80.2
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.4e-51 204.5 115 78.3
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 4.4e-51 204.5 116 82.8
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 5.7e-51 204.1 118 78.0
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 5.7e-51 204.1 112 82.1
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 7.5e-51 203.8 116 76.7
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 7.5e-51 203.8 119 80.7
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 7.5e-51 203.8 119 80.7
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 7.5e-51 203.8 127 74.8
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.3e-50 203.0 117 76.9
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.3e-50 203.0 114 80.7
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.2e-50 202.2 116 77.6
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 2.2e-50 202.2 117 77.8
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.8e-50 201.8 115 79.1
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 2.8e-50 201.8 113 80.5
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 3.7e-50 201.4 114 79.8
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 3.7e-50 201.4 116 79.3
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 4.8e-50 201.1 119 78.2
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 6.3e-50 200.7 116 78.4
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 6.3e-50 200.7 116 78.4
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 6.3e-50 200.7 116 78.4
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 6.3e-50 200.7 116 78.4
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 6.3e-50 200.7 116 78.4
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 1.8e-49 199.1 116 77.6
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.8e-49 199.1 116 77.6
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.8e-49 199.1 116 78.4
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 2.4e-49 198.7 116 76.7
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 2.4e-49 198.7 116 77.6
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 2.4e-49 198.7 116 77.6
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 2.4e-49 198.7 116 77.6
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 3.1e-49 198.4 116 77.6
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 4.1e-49 198.0 119 80.7
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 4.1e-49 198.0 121 73.6
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 5.3e-49 197.6 116 76.7
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 5.3e-49 197.6 116 76.7
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 5.3e-49 197.6 118 76.3
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 7.0e-49 197.2 116 76.7
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 9.1e-49 196.8 116 75.9
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 9.1e-49 196.8 118 76.3
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.0e-48 195.7 116 75.9
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 7.7e-48 193.7 115 77.4
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 1.0e-47 193.4 116 75.9
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.3e-47 193.0 114 76.3
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.7e-47 192.6 118 74.6
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.2e-47 192.2 115 76.5
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.2e-47 192.2 115 76.5
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 2.2e-47 192.2 117 75.2
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 2.2e-47 192.2 117 75.2
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 2.2e-47 192.2 117 75.2
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 2.2e-47 192.2 117 75.2
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 2.2e-47 192.2 117 75.2
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 3.8e-47 191.4 128 69.5
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 6.5e-47 190.7 167 59.3
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 1.1e-46 189.9 117 74.4
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 1.9e-46 189.1 117 75.2
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 2.5e-46 188.7 116 73.3
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 5.5e-46 187.6 117 75.2
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 9.4e-46 186.8 117 71.8
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.7e-45 185.3 113 76.1
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 4.7e-45 184.5 117 73.5
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 8.0e-45 183.7 115 74.8
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.8e-44 182.6 117 75.2
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 3.0e-44 181.8 117 74.4
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.2e-43 179.9 132 65.9
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.7e-42 176.0 98 81.6
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.7e-42 176.0 98 81.6
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.2e-42 175.6 99 80.8
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 3.1e-41 171.8 97 78.4
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.1e-41 171.4 97 77.3
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 2.0e-40 169.1 119 70.6
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 1.3e-39 166.4 96 78.1
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.7e-39 166.0 100 75.0
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 5.0e-39 164.5 121 66.9
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 2.8e-37 158.7 101 72.3
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 6.1e-37 157.5 97 75.3
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 4.0e-36 154.8 114 62.3
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 5.2e-36 154.5 112 62.5
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 8.9e-36 153.7 110 60.0
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 4.9e-34 147.9 98 69.4
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 6.3e-34 147.5 100 71.0
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 7.8e-32 140.6 115 54.8
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 6.6e-31 137.5 95 66.3
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.7e-26 122.9 64 85.9
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 8.3e-26 120.6 80 70.0
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.1e-25 120.2 64 82.8
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.4e-25 119.8 68 85.3
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 3.2e-25 118.6 64 85.9
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 1.6e-24 116.3 66 84.8
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 1.6e-24 116.3 120 50.0
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 3.5e-24 115.2 63 82.5
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 8.6e-23 110.5 60 83.3
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 3.3e-22 108.6 63 76.2
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 5.6e-22 107.8 68 73.5
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 7.3e-22 107.5 71 70.4
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 9.5e-22 107.1 59 81.4
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 3.6e-21 105.1 158 40.5
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.5e-19 99.8 110 49.1
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 2.6e-19 99.0 52 80.8
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.7e-18 96.3 54 75.9
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 2.2e-18 95.9 51 78.4
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 3.7e-18 95.1 131 41.2
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 4.9e-18 94.7 137 39.4
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 1.9e-17 92.8 50 78.0
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 8.1e-13 77.4 72 54.2
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 1.5e-11 73.2 53 66.0
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 8.3e-10 67.4 35 88.6
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 6.0e-08 61.2 98 39.8


User provided reference genes

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