Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 9.6e-54 213.4 119 100.0
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 3.7e-29 131.7 124 68.5
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.1e-28 130.2 128 65.6
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 2.4e-28 129.0 123 68.3
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.1e-28 128.6 125 67.2
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.1e-28 128.6 125 67.2
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 4.1e-28 128.3 96 76.0
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.1e-28 128.3 95 76.8
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 4.1e-28 128.3 118 66.9
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 6.9e-28 127.5 117 67.5
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 9.0e-28 127.1 121 66.9
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 9.0e-28 127.1 119 63.0
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.2e-27 126.7 124 66.9
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 1.2e-27 126.7 117 63.2
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.5e-27 126.3 122 65.6
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 2.0e-27 125.9 129 62.8
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 2.6e-27 125.6 118 65.3
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 2.6e-27 125.6 118 65.3
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.6e-27 125.6 125 65.6
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.6e-27 125.6 114 65.8
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 4.5e-27 124.8 122 63.1
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 4.5e-27 124.8 118 66.1
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.5e-27 124.8 125 65.6
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 7.6e-27 124.0 119 63.0
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 7.6e-27 124.0 112 66.1
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 1.0e-26 123.6 118 68.6
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.0e-26 123.6 123 64.2
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 1.3e-26 123.2 120 62.5
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.3e-26 123.2 116 65.5
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 1.7e-26 122.9 126 62.7
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.7e-26 122.9 117 61.5
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.7e-26 122.9 116 66.4
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-26 122.5 114 65.8
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 2.2e-26 122.5 114 64.9
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 2.2e-26 122.5 125 64.0
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 2.2e-26 122.5 112 66.1
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 2.2e-26 122.5 117 63.2
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 2.2e-26 122.5 113 64.6
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-26 122.1 114 65.8
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 3.8e-26 121.7 114 65.8
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 3.8e-26 121.7 121 63.6
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.8e-26 121.7 125 60.8
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 5.0e-26 121.3 123 62.6
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.0e-26 121.3 123 62.6
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.0e-26 121.3 123 62.6
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 5.0e-26 121.3 113 62.8
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 6.5e-26 120.9 125 64.0
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 6.5e-26 120.9 125 64.0
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 6.5e-26 120.9 118 64.4
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 6.5e-26 120.9 126 62.7
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 8.4e-26 120.6 101 69.3
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 8.4e-26 120.6 120 64.2
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 1.1e-25 120.2 94 74.5
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.1e-25 120.2 128 63.3
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 1.1e-25 120.2 119 58.8
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.4e-25 119.8 122 62.3
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.4e-25 119.8 114 64.9
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.4e-25 119.8 114 64.9
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 1.4e-25 119.8 120 61.7
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.9e-25 119.4 94 73.4
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.9e-25 119.4 123 66.7
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.9e-25 119.4 115 60.9
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.9e-25 119.4 115 60.9
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 1.9e-25 119.4 113 62.8
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.9e-25 119.4 124 61.3
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 1.9e-25 119.4 119 62.2
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 1.9e-25 119.4 120 63.3
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.5e-25 119.0 122 62.3
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 2.5e-25 119.0 100 70.0
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 3.2e-25 118.6 121 62.0
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.2e-25 118.2 117 61.5
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.2e-25 118.2 117 61.5
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.2e-25 118.2 123 63.4
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 5.5e-25 117.9 124 63.7
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 5.5e-25 117.9 125 60.8
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.2e-25 117.5 113 61.9
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 7.2e-25 117.5 116 62.1
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 7.2e-25 117.5 121 61.2
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.3e-25 117.1 117 60.7
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.2e-24 116.7 102 65.7
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-24 116.7 124 60.5
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.2e-24 116.7 111 64.0
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 2.1e-24 115.9 105 63.8
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 2.1e-24 115.9 116 61.2
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 2.7e-24 115.5 117 59.8
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 2.7e-24 115.5 126 58.7
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.7e-24 115.5 126 61.1
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.5e-24 115.2 122 60.7
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 3.5e-24 115.2 118 61.9
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 4.6e-24 114.8 126 62.7
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.6e-24 114.8 126 57.1
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 4.6e-24 114.8 116 58.6
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 4.6e-24 114.8 122 61.5
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 6.1e-24 114.4 119 60.5
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 7.9e-24 114.0 119 60.5
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.0e-23 113.6 116 61.2
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.3e-23 113.2 120 60.0
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.3e-23 113.2 120 60.0
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.3e-23 113.2 95 66.3
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.8e-23 112.8 114 59.6
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 3.0e-23 112.1 119 63.0
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 3.0e-23 112.1 119 56.3
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.0e-23 112.1 122 59.8
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 3.9e-23 111.7 121 61.2
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 5.1e-23 111.3 108 62.0
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 5.1e-23 111.3 120 61.7
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 5.1e-23 111.3 123 61.0
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 6.7e-23 110.9 124 60.5
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 1.5e-22 109.8 120 58.3
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 1.5e-22 109.8 120 58.3
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 1.5e-22 109.8 120 58.3
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.5e-22 109.8 127 55.9
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.9e-22 109.4 115 55.7
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 1.9e-22 109.4 95 66.3
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 1.9e-22 109.4 124 58.9
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.9e-22 109.4 95 66.3
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.9e-22 109.4 128 58.6
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.5e-22 109.0 95 66.3
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 2.5e-22 109.0 102 64.7
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.5e-22 109.0 118 57.6
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.3e-22 108.6 120 60.0
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 3.3e-22 108.6 94 68.1
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.3e-22 108.2 118 61.0
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.3e-22 108.2 96 65.6
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 7.4e-22 107.5 120 55.8
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 7.4e-22 107.5 101 65.3
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.3e-21 106.7 118 57.6
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.6e-21 106.3 115 57.4
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 2.2e-21 105.9 123 57.7
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 2.8e-21 105.5 127 55.1
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 2.8e-21 105.5 128 55.5
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 4.8e-21 104.8 126 54.8
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 4.8e-21 104.8 117 56.4
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 4.8e-21 104.8 127 56.7
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 4.8e-21 104.8 129 55.0
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 4.8e-21 104.8 112 59.8
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 8.2e-21 104.0 120 56.7
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 8.2e-21 104.0 115 58.3
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 8.2e-21 104.0 130 56.2
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 1.1e-20 103.6 122 57.4
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 2.4e-20 102.4 114 55.3
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 5.3e-20 101.3 101 62.4
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 1.2e-19 100.1 97 61.9
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 5.9e-19 97.8 119 53.8
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.0e-18 97.1 127 52.0
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 2.2e-18 95.9 111 54.1
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 1.1e-17 93.6 88 55.7
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 4.6e-16 88.2 119 48.7
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 6.1e-16 87.8 119 44.5
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 6.1e-16 87.8 116 51.7
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 2.3e-15 85.9 114 52.6
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.1e-14 83.6 120 45.0
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 2.5e-14 82.4 73 63.0
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 2.2e-13 79.3 52 82.7
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 3.1e-12 75.5 63 69.8
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 6.9e-12 74.3 114 43.9
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 3.4e-11 72.0 121 43.8
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.4e-11 72.0 105 51.4
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 2.5e-09 65.9 122 37.7
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 3.9e-07 58.5 114 38.6
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 5.1e-07 58.2 92 44.6


User provided reference genes

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