Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3240 Punica granatum HOM05D007621 ORTHO05D009631 0.0e+00 1091.3 538 100.0
PGR042G2283 Punica granatum HOM05D007621 ORTHO05D009631 3.8e-198 695.3 653 59.9
Actinidia11809 Actinidia chinensis HOM05D007621 ORTHO05D009631 1.2e-159 567.4 505 58.8
Dinv40478 Davidia involucrata HOM05D007621 ORTHO05D009631 4.5e-159 565.5 500 59.0
TAR624G0533 Trochodendron aralioides HOM05D007621 ORTHO05D009631 3.8e-158 562.4 500 58.4
GSVIVG01003190001 Vitis vinifera HOM05D007621 ORTHO05D009631 3.2e-157 559.3 520 56.2
CSS0049226 Camellia sinensis var. sinensis HOM05D007621 ORTHO05D009631 9.4e-157 557.8 470 61.1
Haze_06574 Corylus avellana HOM05D007621 ORTHO05D009631 1.2e-156 557.4 469 60.6
ClCG03G005520 Citrullus lanatus HOM05D007621 ORTHO05D009631 2.1e-156 556.6 465 60.4
Prupe.4G036900 Prunus persica HOM05D007621 ORTHO05D009631 3.0e-155 552.7 467 60.4
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 1.1e-154 550.8 469 58.4
HPP92_005890 Vanilla planifolia HOM05D007621 ORTHO05D009631 4.3e-154 548.9 462 58.9
Manes.16G020600 Manihot esculenta HOM05D007621 ORTHO05D009631 8.2e-153 544.7 472 59.3
QL04p018250 Quercus lobata HOM05D007621 ORTHO05D009631 8.2e-153 544.7 423 64.3
ATR0693G363 Amborella trichopoda HOM05D007621 ORTHO05D009631 4.1e-152 542.3 471 57.5
TWI38G0795 Tripterygium wilfordii HOM05D007621 ORTHO05D009631 2.6e-151 539.7 553 53.3
Rhsim02G0119600 Rhododendron simsii HOM05D007621 ORTHO05D009631 1.1e-149 534.3 509 56.2
Sed0011037 Sechium edule HOM05D007621 ORTHO05D009631 5.5e-149 531.9 507 55.8
Ciclev10014484m.g Citrus clementina HOM05D007621 ORTHO05D009631 1.6e-148 530.4 469 57.1
Nn1g03894 Nelumbo nucifera HOM05D007621 ORTHO05D009631 6.1e-148 528.5 489 55.8
Hma1.2p1_1182F.1_g264810 Hydrangea macrophylla HOM05D007621 ORTHO05D009631 2.3e-147 526.6 497 55.9
SalBow7G3398 Salvia bowleyana HOM05D007621 ORTHO05D009631 2.3e-147 526.6 539 53.4
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 1.1e-146 524.2 498 56.4
SalBow7G0238 Salvia bowleyana HOM05D007621 ORTHO05D009631 1.1e-146 524.2 539 53.4
RcHm_v2.0_Chr5g0006311 Rosa chinensis HOM05D007621 ORTHO05D009631 3.3e-146 522.7 526 52.7
FvH4_3g03980 Fragaria vesca HOM05D007621 ORTHO05D009631 2.2e-145 520.0 455 57.6
MELO3C002556.2 Cucumis melo HOM05D007621 ORTHO05D009631 1.4e-144 517.3 465 58.5
Eucgr.E03798 Eucalyptus grandis HOM05D007621 ORTHO05D009631 4.1e-144 515.8 497 54.5
Glyma.15G067500 Glycine max HOM05D007621 ORTHO05D009631 9.1e-144 514.6 460 58.3
FAN11G2677 Fragaria x ananassa HOM05D007621 ORTHO05D009631 1.5e-143 513.8 435 59.1
MSTRG.14678 Avicennia marina HOM05D007621 ORTHO05D009631 2.6e-143 513.1 468 57.1
VMungo0540G1980 Vigna mungo HOM05D007621 ORTHO05D009631 4.5e-143 512.3 451 58.8
CsaV3_1G011790 Cucumis sativus L. HOM05D007621 ORTHO05D009631 5.9e-143 511.9 465 57.6
MD05G1325500 Malus domestica HOM05D007621 ORTHO05D009631 2.2e-142 510.0 550 52.7
Lj6g0025549 Lotus japonicus HOM05D007621 ORTHO05D009631 1.1e-141 507.7 484 55.4
CDE12G0841 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 5.5e-141 505.4 532 51.7
Psat1g208720 Pisum sativum HOM05D007621 ORTHO05D009631 7.2e-141 505.0 515 52.4
SGA_v2.0_scaffold49G18280 Striga asiatica HOM05D007621 ORTHO05D009631 9.4e-141 504.6 559 50.3
CAN.G424.15 Capsicum annuum HOM05D007621 ORTHO05D009631 1.6e-140 503.8 493 54.6
PGSC0003DMG400022357 Solanum tuberosum HOM05D007621 ORTHO05D009631 1.8e-139 500.4 478 54.0
Os04g0636000 Oryza sativa ssp. japonica HOM05D007621 ORTHO05D009631 8.8e-139 498.0 505 52.5
Sc14g0001480 Simmondsia chinensis HOM05D007621 ORTHO05D009631 8.8e-139 498.0 478 54.2
Cc02_g12430 Coffea canephora HOM05D007621 ORTHO05D009631 1.5e-138 497.3 455 55.8
Solyc02g079140.2 Solanum lycopersicum HOM05D007621 ORTHO05D009631 2.0e-138 496.9 445 56.4
Sopen02g023940 Solanum pennellii HOM05D007621 ORTHO05D009631 2.0e-138 496.9 445 56.4
CDE01G0329 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 9.7e-138 494.6 428 57.7
AUR62014718 Chenopodium quinoa HOM05D007621 ORTHO05D009631 9.7e-138 494.6 471 55.4
Peaxi162Scf00083g00022 Petunia axillaris HOM05D007621 ORTHO05D009631 9.7e-138 494.6 452 56.6
Zm00001eb069260 Zea mays HOM05D007621 ORTHO05D009631 2.8e-137 493.0 471 55.0
Nitab4.5_0006573g0020 Nicotiana tabacum HOM05D007621 ORTHO05D009631 4.8e-137 492.3 477 54.5
HanXRQChr11g0338441 Helianthus annuus HOM05D007621 ORTHO05D009631 1.1e-136 491.1 415 59.3
ECA248G3190 Erigeron canadensis HOM05D007621 ORTHO05D009631 1.4e-136 490.7 420 59.0
AUR62016897 Chenopodium quinoa HOM05D007621 ORTHO05D009631 1.8e-136 490.3 466 56.0
arahy.Tifrunner.gnm1.ann1.M1GH8V Arachis hypogaea HOM05D007621 ORTHO05D009631 2.4e-136 490.0 453 56.1
Nitab4.5_0000190g0070 Nicotiana tabacum HOM05D007621 ORTHO05D009631 3.1e-136 489.6 441 56.9
SEGI_29793 Sequoiadendron giganteum HOM05D007621 ORTHO05D009631 2.6e-135 486.5 486 52.7
EL10Ac8g20530 Beta vulgaris HOM05D007621 ORTHO05D009631 1.7e-134 483.8 516 50.8
FAN16G2797 Fragaria x ananassa HOM05D007621 ORTHO05D009631 1.9e-133 480.3 468 53.8
Lj1C1213T4 Lonicera japonica HOM05D007621 ORTHO05D009631 3.2e-133 479.6 511 53.0
Lsat_1_v5_gn_1_126820 Lactuca sativa HOM05D007621 ORTHO05D009631 5.5e-133 478.8 468 55.1
Ca_00253_v3 Cicer arietinum L. HOM05D007621 ORTHO05D009631 4.0e-131 472.6 491 51.3
arahy.Tifrunner.gnm1.ann1.14L1JV Arachis hypogaea HOM05D007621 ORTHO05D009631 3.7e-129 466.1 425 56.5
CDE01G0148 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 1.2e-127 461.1 427 54.3
Mapoly0104s0019 Marchantia polymorpha HOM05D007621 ORTHO05D009631 1.7e-126 457.2 426 54.2
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 6.5e-126 455.3 505 49.9
Phvul.006G192200 Phaseolus vulgaris HOM05D007621 ORTHO05D009631 1.5e-125 454.1 496 51.2
Hund23606 Selenicereus undatus HOM05D007621 ORTHO05D009631 1.5e-114 417.5 372 56.5
Thecc.06G199600 Theobroma cacao HOM05D007621 ORTHO05D009631 8.9e-107 391.7 432 51.6
Zm00001eb081180 Zea mays HOM05D007621 ORTHO05D009631 6.0e-103 379.0 407 50.1
CBR_g725 Chara braunii HOM05D007621 ORTHO05D009631 2.6e-98 363.6 453 42.8
Aqoxy1G02733 Aquilegia oxysepala HOM05D007621 ORTHO05D009631 2.3e-91 340.5 291 58.4
Eucgr.E03700 Eucalyptus grandis HOM05D007621 ORTHO05D009631 9.2e-88 328.6 342 52.3
Zm00001eb274720 Zea mays HOM05D007621 ORTHO05D009631 4.8e-76 289.7 261 55.9
CiPaw.09G157900 Carya illinoinensis HOM05D007621 ORTHO05D009631 3.3e-69 266.9 206 64.1
Medtr2g011780 Medicago truncatula HOM05D007621 ORTHO05D009631 6.2e-68 262.7 280 50.4
RcHm_v2.0_Chr7g0240451 Rosa chinensis HOM05D007621 ORTHO05D009631 6.2e-68 262.7 393 41.5
FAN25G1179 Fragaria x ananassa HOM05D007621 ORTHO05D009631 4.8e-60 236.5 253 49.8
Oeu050825.1 Olea europaea HOM05D007621 ORTHO05D009631 1.7e-57 228.0 201 59.2
arahy.Tifrunner.gnm1.ann1.C857YU Arachis hypogaea HOM05D007621 ORTHO05D009631 7.6e-50 202.6 283 43.1
Psat1g210360 Pisum sativum HOM05D007621 ORTHO05D009631 3.3e-45 187.2 192 52.1
FvH4_6g02023 Fragaria vesca HOM05D007621 ORTHO05D009631 6.5e-33 146.4 129 50.4
Glyma.13G246302 Glycine max HOM05D007621 ORTHO05D009631 2.2e-25 121.3 153 48.4
Potri.004G034301 Populus trichocarpa HOM05D007621 ORTHO05D009631 3.2e-24 117.5 78 65.4
Atru.chr10.2012 Acer truncatum HOM05D007621 ORTHO05D009631 1.1e-21 109.0 138 44.2
Cre02.g116800 Chlamydomonas reinhardtii HOM05D007621 ORTHO05D009631 9.7e-21 105.9 582 23.9
Cpa.g.sc27.127 Carica papaya HOM05D007621 ORTHO05D009631 1.0e-17 95.9 124 46.0
SGA_v2.0_scaffold32G13107 Striga asiatica HOM05D007621 ORTHO05D009631 1.0e-14 85.9 90 52.2
Atru.chr10.2011 Acer truncatum HOM05D007621 ORTHO05D009631 8.8e-14 82.8 90 47.8
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 5.7e-13 80.1 228 30.3
AagrBONN_evm.TU.Sc2ySwM_340.408 Anthoceros agrestis HOM05D007621 ORTHO05D009631 1.8e-11 75.1 80 46.2
SGA_v2.0_scaffold86G26914 Striga asiatica HOM05D007621 ORTHO05D009631 5.0e-09 67.0 56 58.9
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 3.6e-07 60.8 199 30.2
Sabra04G0020100 Salix brachista HOM05D007621 ORTHO05D009631 1.8e-06 58.5 165 24.8
EL10Ac8g20531 Beta vulgaris HOM05D007621 ORTHO05D009631 5.2e-06 57.0 66 45.5


User provided reference genes

Program Settings