Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 1.6e-272 942.2 489 100.0
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.1e-180 637.1 457 75.1
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 3.9e-178 628.6 444 76.8
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 2.8e-176 622.5 462 73.6
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 5.9e-174 614.8 445 74.8
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 1.6e-171 606.7 474 71.1
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 6.1e-171 604.7 449 73.1
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 1.4e-170 603.6 449 73.5
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.0e-170 602.4 449 72.4
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.7e-168 595.5 421 74.6
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 2.4e-167 592.8 432 73.8
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 6.9e-167 591.3 456 70.8
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.5e-166 590.1 466 69.5
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 4.5e-166 588.6 428 73.8
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 5.9e-166 588.2 449 72.2
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 1.7e-165 586.6 438 72.1
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 1.7e-165 586.6 445 73.3
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.7e-165 586.6 464 70.9
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 2.9e-165 585.9 443 72.5
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 8.5e-165 584.3 439 72.2
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.9e-164 583.2 429 74.1
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.9e-164 583.2 464 70.5
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 2.5e-164 582.8 441 72.3
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 7.2e-164 581.3 452 69.9
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.2e-163 580.5 426 73.9
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 2.1e-163 579.7 423 74.0
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.1e-163 579.7 458 71.0
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 3.6e-163 578.9 462 68.2
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 4.7e-163 578.6 450 69.8
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.0e-162 577.4 419 74.2
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 1.4e-162 577.0 457 70.5
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 3.9e-162 575.5 472 66.9
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 8.8e-162 574.3 460 68.3
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 1.1e-161 573.9 431 73.3
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 2.6e-161 572.8 444 71.2
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 4.4e-161 572.0 423 73.8
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.4e-161 572.0 423 73.8
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 1.7e-160 570.1 453 68.9
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.2e-160 569.7 459 69.7
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.2e-160 569.7 459 69.7
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.8e-160 569.3 461 67.2
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 3.7e-160 568.9 453 68.0
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 4.8e-160 568.5 448 69.2
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.3e-160 568.2 423 73.3
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.4e-159 567.0 446 69.5
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 5.3e-159 565.1 451 69.4
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 5.3e-159 565.1 417 71.5
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 7.0e-159 564.7 462 67.5
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 9.1e-159 564.3 471 68.2
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 9.1e-159 564.3 453 67.1
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 2.6e-158 562.8 474 64.1
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 2.6e-158 562.8 433 71.1
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 3.5e-158 562.4 430 72.8
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 4.5e-158 562.0 443 69.5
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.0e-157 560.8 430 70.9
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.5e-156 556.2 454 67.6
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 2.5e-156 556.2 449 66.4
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 9.4e-156 554.3 561 58.3
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.2e-155 553.9 427 71.2
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.6e-155 552.4 437 70.7
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.0e-154 550.8 465 66.5
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.0e-154 550.8 465 66.5
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 1.8e-154 550.1 533 59.3
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 1.1e-153 547.4 442 67.6
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.1e-153 547.4 419 72.1
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 1.5e-153 547.0 441 69.4
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 5.7e-153 545.0 444 67.8
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.7e-152 543.5 430 69.1
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 2.8e-152 542.7 410 69.0
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.8e-152 542.0 430 69.1
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.8e-152 542.0 430 69.1
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 8.2e-152 541.2 443 66.1
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 3.1e-151 539.3 439 68.8
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 4.1e-151 538.9 432 69.0
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 2.0e-150 536.6 453 66.9
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 4.5e-150 535.4 444 67.8
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 7.7e-150 534.6 422 68.5
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.7e-149 533.5 441 67.8
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 3.8e-149 532.3 446 66.1
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 1.9e-148 530.0 441 66.4
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.9e-148 530.0 458 65.7
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 7.2e-148 528.1 415 67.7
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.0e-146 524.2 466 63.3
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 1.4e-146 523.9 462 63.0
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.8e-146 523.5 467 63.8
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 1.8e-146 523.5 459 63.4
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.8e-146 523.5 419 68.0
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 2.3e-146 523.1 467 63.2
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 1.2e-145 520.8 462 63.2
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.1e-143 514.2 439 64.5
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 5.4e-143 511.9 404 66.8
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.0e-141 507.7 431 66.1
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 3.8e-141 505.8 453 62.3
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 7.2e-140 501.5 412 67.0
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 6.1e-139 498.4 454 62.8
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 3.0e-138 496.1 440 63.9
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.2e-137 494.2 396 66.9
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 2.6e-137 493.0 475 61.1
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 9.2e-135 484.6 528 53.0
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 6.6e-133 478.4 372 69.4
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 3.4e-129 466.1 434 61.1
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.9e-128 463.0 445 59.6
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 4.9e-128 462.2 410 63.4
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 1.1e-127 461.1 383 68.7
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 3.2e-127 459.5 428 60.5
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 2.0e-126 456.8 440 58.4
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 5.9e-126 455.3 412 59.7
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.5e-124 449.9 410 59.3
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.2e-123 447.6 364 66.5
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.6e-123 447.2 423 61.7
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 3.6e-123 446.0 332 73.5
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.7e-123 445.7 410 58.8
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.1e-119 434.5 438 57.1
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 1.6e-118 430.6 418 58.9
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.0e-118 430.3 410 60.2
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 3.0e-117 426.4 378 62.2
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.2e-113 414.5 426 56.1
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.8e-113 412.1 422 55.5
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.6e-109 398.3 372 57.8
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 3.3e-108 396.4 386 60.1
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 5.2e-106 389.0 363 59.0
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 8.4e-104 381.7 388 58.5
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 8.4e-104 381.7 378 56.9
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.4e-103 380.9 379 56.5
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 1.9e-100 370.5 376 58.0
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 1.1e-95 354.8 580 42.2
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 2.8e-91 340.1 349 56.4
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 7.9e-86 322.0 295 62.7
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.1e-85 319.3 407 48.4
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.3e-83 314.7 335 53.4
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 3.8e-80 303.1 370 47.8
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 4.9e-80 302.8 330 53.0
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 5.6e-76 289.3 307 56.4
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 4.8e-75 286.2 284 60.2
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 8.7e-69 265.4 291 51.9
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 7.6e-65 252.3 288 51.7
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 9.7e-60 235.3 121 95.0
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 5.9e-57 226.1 247 54.7
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 1.3e-56 224.9 238 58.0
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 2.2e-48 197.6 193 57.5
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 6.1e-46 189.5 338 34.6
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.8e-45 188.0 242 45.5
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 9.7e-44 182.2 134 73.9
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 2.9e-40 170.6 131 71.8
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 1.6e-38 164.9 135 70.4
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 9.7e-36 155.6 101 82.2
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 4.0e-29 133.7 109 64.2
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 6.3e-27 126.3 174 50.6
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 1.0e-24 119.0 166 49.4
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 1.3e-24 118.6 80 77.5
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.9e-23 114.8 82 76.8
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 3.2e-23 114.0 70 81.4
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 5.5e-23 113.2 75 74.7
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 6.8e-21 106.3 58 87.9
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 6.3e-19 99.8 104 52.9
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 6.3e-19 99.8 212 39.6
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 1.1e-18 99.0 148 43.2
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.8e-18 98.2 60 78.3
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 1.0e-16 92.4 78 62.8
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 2.9e-16 90.9 51 84.3
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 5.0e-16 90.1 67 70.1
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.2e-14 85.5 51 82.4
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.6e-14 85.1 78 59.0
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.8e-14 84.3 82 59.8
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.0e-13 82.4 86 57.0
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 9.8e-12 75.9 51 74.5
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.7e-11 73.9 65 58.5
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 7.8e-09 66.2 81 53.1
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.0e-08 65.9 45 66.7
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 1.7e-08 65.1 64 59.4
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.9e-08 63.9 36 88.9


User provided reference genes

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