Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 7.5e-161 570.5 289 100.0
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 4.3e-92 342.0 294 61.2
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 1.1e-90 337.4 266 65.8
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 3.1e-90 335.9 288 61.5
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 4.1e-90 335.5 287 64.1
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 1.5e-89 333.6 289 61.2
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 2.0e-89 333.2 289 61.2
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 4.5e-89 332.0 283 64.3
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 5.9e-89 331.6 264 66.3
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 3.8e-88 328.9 285 61.8
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 5.0e-88 328.6 293 66.2
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 5.0e-88 328.6 293 62.1
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 6.5e-88 328.2 279 65.6
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 1.9e-87 326.6 297 60.9
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 9.4e-87 324.3 293 61.8
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 9.4e-87 324.3 302 62.9
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 2.7e-86 322.8 297 60.3
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 2.7e-86 322.8 265 63.8
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 1.0e-85 320.9 232 72.0
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 1.4e-85 320.5 280 62.5
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 5.1e-85 318.5 301 59.1
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 6.7e-85 318.2 296 59.8
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 6.7e-85 318.2 297 58.9
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 2.5e-84 316.2 217 71.4
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 2.5e-84 316.2 290 61.0
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 5.7e-84 315.1 293 59.7
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 7.4e-84 314.7 291 60.1
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 9.7e-84 314.3 238 65.1
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 1.3e-83 313.9 282 62.8
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 2.2e-83 313.2 246 66.3
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 6.3e-83 311.6 275 62.2
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 1.8e-82 310.1 298 58.1
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 1.8e-82 310.1 294 60.5
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.4e-82 309.7 209 73.2
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 4.1e-82 308.9 310 56.8
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 4.1e-82 308.9 271 62.4
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 5.3e-82 308.5 300 58.3
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 5.3e-82 308.5 278 62.2
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 9.1e-82 307.8 292 59.9
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 1.2e-81 307.4 289 59.2
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 1.2e-81 307.4 297 59.3
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 2.0e-81 306.6 222 70.3
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 2.0e-81 306.6 222 70.3
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.0e-81 306.6 284 61.6
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.0e-81 306.6 280 61.8
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 2.6e-81 306.2 294 59.2
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 3.4e-81 305.8 282 61.3
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 3.4e-81 305.8 264 63.3
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 7.7e-81 304.7 293 59.0
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 7.7e-81 304.7 280 61.8
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 1.0e-80 304.3 220 70.0
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.3e-80 303.9 295 59.3
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 1.3e-80 303.9 263 63.5
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 1.3e-80 303.9 293 59.0
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.7e-80 303.5 284 61.3
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 2.9e-80 302.8 271 59.8
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 3.8e-80 302.4 296 57.8
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 3.8e-80 302.4 287 58.2
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 6.5e-80 301.6 286 60.5
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 8.5e-80 301.2 300 57.0
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 8.5e-80 301.2 276 59.4
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.5e-79 299.7 264 61.7
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 3.2e-79 299.3 297 57.9
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 3.2e-79 299.3 298 56.7
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 3.2e-79 299.3 297 57.9
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 9.4e-79 297.7 293 58.4
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.2e-78 297.4 265 59.6
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 2.7e-78 296.2 241 63.5
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 3.6e-78 295.8 230 67.4
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 4.7e-78 295.4 304 57.6
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 6.1e-78 295.0 285 54.7
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 7.9e-78 294.7 219 67.6
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.0e-77 294.3 284 60.6
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 1.8e-77 293.5 300 56.3
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 3.9e-77 292.4 222 67.1
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 5.1e-77 292.0 301 56.8
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 5.1e-77 292.0 221 67.9
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 5.1e-77 292.0 303 57.4
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 1.1e-76 290.8 215 66.5
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 2.0e-76 290.0 260 58.5
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 3.3e-76 289.3 207 70.0
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 4.4e-76 288.9 309 52.1
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 4.4e-76 288.9 215 69.8
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 7.4e-76 288.1 284 58.8
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 6.3e-75 285.0 304 55.9
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 6.3e-75 285.0 284 55.3
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.4e-74 283.9 307 55.4
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.4e-74 283.9 321 53.0
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.2e-73 280.8 304 55.6
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 2.6e-73 279.6 301 51.8
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 3.5e-73 279.3 278 56.1
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.0e-72 277.7 272 56.2
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 8.5e-72 274.6 297 52.2
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 1.4e-71 273.9 237 61.2
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 1.4e-71 273.9 249 58.6
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 4.2e-71 272.3 297 51.9
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 1.6e-70 270.4 215 64.2
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 2.1e-70 270.0 273 53.5
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.5e-68 263.8 241 61.8
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 3.3e-68 262.7 245 57.6
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 9.7e-68 261.2 276 54.7
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 2.2e-67 260.0 214 60.3
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.8e-67 259.6 223 60.1
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.8e-67 259.6 223 60.1
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.8e-67 259.6 221 61.1
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.2e-64 250.0 219 59.8
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 8.5e-64 248.1 206 59.7
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 9.7e-60 234.6 229 59.0
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 1.7e-59 233.8 202 56.9
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 7.7e-57 224.9 203 59.6
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.1e-55 221.1 213 57.7
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 2.7e-54 216.5 202 55.9
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 3.0e-53 213.0 168 66.1
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 3.0e-53 213.0 207 54.1
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 1.5e-52 210.7 212 50.0
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 1.4e-42 177.6 126 70.6
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.8e-42 177.2 234 49.1
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 1.8e-42 177.2 220 50.9
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 7.0e-42 175.3 206 45.1
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 8.6e-40 168.3 208 45.7
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 7.3e-39 165.2 173 51.4
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 6.1e-38 162.2 212 43.4
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.0e-37 161.4 240 40.8
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 2.9e-35 153.3 171 50.3
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 5.6e-31 139.0 111 65.8
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 6.2e-30 135.6 116 61.2
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 1.3e-24 117.9 134 46.3
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 2.3e-21 107.1 82 63.4
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 3.4e-20 103.2 78 66.7
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.4e-18 97.8 61 70.5
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 2.1e-17 94.0 184 37.5
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 3.0e-16 90.1 143 41.3
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.4e-13 81.3 78 50.0
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.5e-12 77.8 102 43.1


User provided reference genes

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