Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 2301.2 1216 100.0
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1287.3 1271 58.8
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1201.0 1259 55.4
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1198.3 1196 57.9
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1176.0 1241 55.3
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1170.2 1243 55.6
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1170.2 1182 57.4
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1167.1 1283 54.2
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1157.5 1120 57.2
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1138.3 1231 54.8
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1135.9 1209 54.9
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1132.9 1272 53.7
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1127.9 1255 53.2
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1125.5 1284 52.1
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1120.5 1222 54.2
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1117.1 1254 53.3
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1114.8 1191 54.3
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1111.7 1272 52.4
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1103.6 1281 52.2
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1100.5 1130 56.2
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1099.3 1277 51.8
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1097.8 1228 53.3
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 0.0e+00 1097.4 1227 52.2
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1097.4 1275 52.4
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1092.8 1272 51.1
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 1092.0 1282 52.0
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 0.0e+00 1088.9 1263 51.5
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1087.4 1243 51.2
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 0.0e+00 1087.0 1237 51.9
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1085.1 1220 51.7
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 0.0e+00 1084.7 1227 51.5
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1084.7 1276 50.6
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1084.3 1277 51.5
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 0.0e+00 1082.8 1226 52.4
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1082.8 1277 51.8
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1079.3 1220 52.0
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1079.3 1098 55.3
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1078.9 1177 53.4
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 0.0e+00 1077.0 1446 46.3
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 0.0e+00 1076.2 1220 51.7
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1075.1 1176 53.5
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 8.3e-312 1074.3 963 61.4
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 8.3e-312 1074.3 1313 49.7
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 3.3e-311 1072.0 1220 51.4
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 4.8e-310 1068.1 1279 50.9
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.1e-309 1067.0 1223 51.7
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 1.8e-309 1066.2 1223 51.6
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 1.8e-309 1066.2 1223 51.6
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 3.1e-309 1065.4 1223 52.2
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 7.0e-309 1064.3 1276 50.5
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 1.5e-308 1063.1 1221 50.9
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 3.5e-308 1062.0 1140 54.4
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 7.7e-308 1060.8 1350 48.9
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.9e-306 1056.2 1285 48.9
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 7.2e-306 1054.3 1220 51.3
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 2.1e-305 1052.7 1281 48.7
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 3.9e-304 1048.5 1258 49.5
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 2.6e-303 1045.8 1285 49.8
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 2.4e-301 1039.3 1310 48.5
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 4.1e-301 1038.5 1141 52.8
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 2.5e-298 1029.2 1019 57.2
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 5.5e-298 1028.1 1253 49.4
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 1.8e-296 1023.1 1348 47.0
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 2.2e-294 1016.1 1242 49.1
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 3.5e-292 1008.8 1250 48.8
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 1.3e-291 1006.9 1169 51.7
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 2.9e-291 1005.7 1260 49.4
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 2.9e-291 1005.7 1192 49.7
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 3.2e-290 1002.3 1229 48.9
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 4.2e-290 1001.9 1229 49.3
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.2e-290 1001.9 1102 53.7
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 9.4e-290 1000.7 1301 47.3
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 4.7e-289 998.4 1268 48.4
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 8.0e-289 997.7 1301 47.0
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.0e-288 995.3 1309 48.4
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 5.2e-288 995.0 1231 48.8
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 2.0e-287 993.0 1236 48.6
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 9.8e-287 990.7 1340 46.4
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 2.7e-284 982.6 1148 49.9
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 1.1e-282 977.2 1301 46.3
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 5.2e-280 968.4 1261 46.7
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 8.3e-278 961.1 1128 50.4
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 7.0e-277 958.0 955 57.0
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 3.4e-271 939.1 1274 46.1
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.3e-267 927.2 992 53.2
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 5.0e-267 925.2 947 55.1
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 8.6e-267 924.5 1311 44.0
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.2e-265 920.6 1173 49.7
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 8.9e-256 887.9 1286 44.9
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 2.4e-245 853.2 1006 50.4
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 2.3e-243 846.7 1135 47.0
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 8.7e-243 844.7 1048 47.9
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.9e-242 843.6 1228 44.9
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 8.4e-238 828.2 1231 44.6
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 8.4e-238 828.2 1266 43.0
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 2.7e-236 823.2 1179 44.0
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 3.0e-227 793.1 1192 42.9
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 6.9e-224 781.9 1134 43.3
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 2.0e-207 727.2 927 47.7
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 4.5e-207 726.1 970 44.9
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.5e-205 720.3 551 66.4
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.5e-205 720.3 1061 43.4
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 2.1e-204 717.2 513 70.2
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 3.6e-204 716.5 1252 39.9
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 4.0e-179 633.3 967 40.5
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.2e-178 631.7 523 61.6
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 3.0e-163 580.5 1090 36.0
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 3.6e-156 557.0 1179 35.2
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 2.3e-139 501.1 812 39.9
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 5.3e-107 393.7 992 29.7
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 3.9e-94 350.9 710 37.6
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 6.3e-84 317.0 251 64.9
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 4.1e-67 261.2 303 53.5
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 3.7e-52 211.5 267 44.6
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 3.5e-50 204.9 178 59.6
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.3e-49 203.0 157 68.2
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 5.2e-46 191.0 138 70.3
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.1e-43 183.3 629 28.3
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 3.6e-31 141.7 105 64.8
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.4e-30 139.8 99 70.7
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 1.1e-27 130.2 683 23.6
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 1.4e-27 129.8 84 69.0
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.6e-26 126.3 106 63.2
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.0e-25 122.1 114 59.6
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 6.8e-22 110.9 121 47.9
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 2.0e-21 109.4 132 51.5
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.6e-18 98.2 120 48.3
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 3.0e-17 95.5 116 47.4
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.0e-17 95.5 125 47.2
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 5.2e-14 84.7 434 26.3
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 9.0e-14 84.0 144 39.6
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 8.4e-12 77.4 154 35.7
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 2.4e-11 75.9 62 61.3
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.3e-09 70.1 87 40.2
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 3.0e-09 68.9 49 67.3
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 9.6e-08 63.9 54 59.3
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 3.6e-07 62.0 41 73.2


User provided reference genes

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