Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3115 Punica granatum HOM05D002242 ORTHO05D002275 2.0e-145 519.2 297 100.0
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 2.4e-29 133.7 291 37.8
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 3.3e-26 123.2 296 36.8
Gohir.A11G097800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 7.2e-26 122.1 282 36.5
Gohir.D11G102500 Gossypium hirsutum HOM05D002242 ORTHO05D002275 7.2e-26 122.1 282 36.2
Prupe.2G190500 Prunus persica HOM05D002242 ORTHO05D002275 6.1e-25 119.0 295 37.3
Eucgr.E00045 Eucalyptus grandis HOM05D002242 ORTHO05D002275 8.0e-25 118.6 127 53.5
Gorai.007G109600 Gossypium raimondii HOM05D002242 ORTHO05D002275 2.3e-24 117.1 261 36.4
Sabra02G0140300 Salix brachista HOM05D002242 ORTHO05D002275 3.0e-24 116.7 270 34.8
FvH4_7g16850 Fragaria vesca HOM05D002242 ORTHO05D002275 6.8e-24 115.5 290 36.2
FAN10G3865 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.5e-23 114.4 290 36.2
FAN10G2930 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.0e-23 114.0 290 36.2
Haze_15674 Corylus avellana HOM05D002242 ORTHO05D002275 2.6e-23 113.6 295 35.6
Atru.chr5.685 Acer truncatum HOM05D002242 ORTHO05D002275 3.4e-23 113.2 299 33.1
FAN03G2616 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.4e-23 113.2 290 35.9
CiPaw.01G077500 Carya illinoinensis HOM05D002242 ORTHO05D002275 4.4e-23 112.8 292 33.9
FAN06G0152 Fragaria x ananassa HOM05D002242 ORTHO05D002275 4.4e-23 112.8 292 36.3
FAN06G1161 Fragaria x ananassa HOM05D002242 ORTHO05D002275 4.4e-23 112.8 292 36.3
FAN01G2189 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.7e-22 110.9 290 34.8
RcHm_v2.0_Chr1g0360071 Rosa chinensis HOM05D002242 ORTHO05D002275 1.1e-21 108.2 290 36.9
Gohir.A07G136800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 9.2e-21 105.1 281 34.2
Manes.01G244900 Manihot esculenta HOM05D002242 ORTHO05D002275 9.2e-21 105.1 297 32.3
Manes.05G021600 Manihot esculenta HOM05D002242 ORTHO05D002275 1.2e-20 104.8 296 32.1
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 1.2e-20 104.8 296 33.4
Cc02_g39550 Coffea canephora HOM05D002242 ORTHO05D002275 1.6e-20 104.4 288 33.3
Sabra14G0073600 Salix brachista HOM05D002242 ORTHO05D002275 7.8e-20 102.1 295 34.9
Gohir.D07G142066 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.0e-19 101.7 286 35.7
Ciclev10021650m.g Citrus clementina HOM05D002242 ORTHO05D002275 2.3e-19 100.5 204 37.3
MD07G1152200 Malus domestica HOM05D002242 ORTHO05D002275 2.3e-19 100.5 265 35.1
Gorai.001G153800 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.5e-18 97.8 183 39.9
Hma1.2p1_0101F.1_g049310 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.9e-18 97.4 295 33.9
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 7.3e-18 95.5 167 38.3
Potri.002G172900 Populus trichocarpa HOM05D002242 ORTHO05D002275 9.5e-18 95.1 302 33.4
MD01G1083500 Malus domestica HOM05D002242 ORTHO05D002275 1.6e-17 94.4 266 33.1
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 2.1e-17 94.0 274 33.6
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 2.8e-17 93.6 306 30.1
Phvul.006G114400 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 4.7e-17 92.8 171 38.0
GSVIVG01027167001 Vitis vinifera HOM05D002242 ORTHO05D002275 4.7e-17 92.8 298 31.9
Cpa.g.sc96.41 Carica papaya HOM05D002242 ORTHO05D002275 2.3e-16 90.5 167 39.5
Gorai.008G126300 Gossypium raimondii HOM05D002242 ORTHO05D002275 6.8e-16 89.0 135 41.5
Gohir.A12G113100 Gossypium hirsutum HOM05D002242 ORTHO05D002275 8.9e-16 88.6 135 41.5
Potri.014G100200 Populus trichocarpa HOM05D002242 ORTHO05D002275 8.9e-16 88.6 283 32.9
Glyma.03G258400 Glycine max HOM05D002242 ORTHO05D002275 1.2e-15 88.2 123 43.9
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 1.5e-15 87.8 292 30.5
VMungo0540G1854 Vigna mungo HOM05D002242 ORTHO05D002275 1.5e-15 87.8 189 36.0
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 3.4e-15 86.7 287 31.7
Gohir.D12G116600 Gossypium hirsutum HOM05D002242 ORTHO05D002275 4.4e-15 86.3 135 40.7
DCAR_005401 Daucus carota HOM05D002242 ORTHO05D002275 5.8e-15 85.9 265 29.8
Glyma.07G054700 Glycine max HOM05D002242 ORTHO05D002275 5.8e-15 85.9 198 36.4
Hma1.2p1_0390F.1_g142630 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 5.8e-15 85.9 170 40.6
Lj1g0020065 Lotus japonicus HOM05D002242 ORTHO05D002275 9.8e-15 85.1 132 44.7
Actinidia07972 Actinidia chinensis HOM05D002242 ORTHO05D002275 1.7e-14 84.3 297 35.4
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 1.1e-13 81.6 115 44.3
Nitab4.5_0010712g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 1.1e-13 81.6 299 29.1
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 1.1e-13 81.6 298 31.2
Dinv32603 Davidia involucrata HOM05D002242 ORTHO05D002275 4.1e-13 79.7 172 36.6
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 5.4e-13 79.3 163 39.9
Lsat_1_v5_gn_4_33660 Lactuca sativa HOM05D002242 ORTHO05D002275 7.0e-13 79.0 151 39.7
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 7.0e-13 79.0 138 41.3
Lsat_1_v5_gn_6_85600 Lactuca sativa HOM05D002242 ORTHO05D002275 9.2e-13 78.6 149 40.3
DCAR_025263 Daucus carota HOM05D002242 ORTHO05D002275 1.2e-12 78.2 115 45.2
HanXRQChr16g0524311 Helianthus annuus HOM05D002242 ORTHO05D002275 1.6e-12 77.8 135 37.8
Oeu004958.1 Olea europaea HOM05D002242 ORTHO05D002275 1.6e-12 77.8 92 48.9
Actinidia28112 Actinidia chinensis HOM05D002242 ORTHO05D002275 2.0e-12 77.4 156 37.8
Lalb_Chr17g0342761 Lupinus albus HOM05D002242 ORTHO05D002275 2.0e-12 77.4 128 37.5
Medtr7g117695 Medicago truncatula HOM05D002242 ORTHO05D002275 3.5e-12 76.6 128 40.6
COL.COLO4_06225 Corchorus olitorius HOM05D002242 ORTHO05D002275 6.0e-12 75.9 296 29.7
Thecc.03G200400 Theobroma cacao HOM05D002242 ORTHO05D002275 6.0e-12 75.9 136 38.2
Ah.05g179410 Amaranthus hybridus HOM05D002242 ORTHO05D002275 7.8e-12 75.5 203 36.5
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 1.0e-11 75.1 78 53.8
Gorai.008G268100 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.3e-11 74.7 136 39.0
Nitab4.5_0004497g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 1.7e-11 74.3 88 46.6
BcaC04g24107 Brassica carinata HOM05D002242 ORTHO05D002275 2.3e-11 73.9 317 30.6
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 2.3e-11 73.9 321 30.2
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 2.3e-11 73.9 317 30.6
Gohir.A12G249200 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.3e-11 73.9 136 39.0
Gohir.D12G250000 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.3e-11 73.9 136 39.0
Hma1.2p1_0404F.1_g145270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 2.3e-11 73.9 129 39.5
Medtr8g027435 Medicago truncatula HOM05D002242 ORTHO05D002275 2.3e-11 73.9 119 40.3
MSTRG.28269 Avicennia marina HOM05D002242 ORTHO05D002275 3.0e-11 73.6 266 28.9
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 3.0e-11 73.6 122 41.0
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 3.0e-11 73.6 129 39.5
Peaxi162Scf00345g00124 Petunia axillaris HOM05D002242 ORTHO05D002275 3.0e-11 73.6 296 26.4
PGSC0003DMG400000119 Solanum tuberosum HOM05D002242 ORTHO05D002275 3.0e-11 73.6 145 37.9
Actinidia08657 Actinidia chinensis HOM05D002242 ORTHO05D002275 3.9e-11 73.2 183 33.9
Ca_09517_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 3.9e-11 73.2 301 29.9
Lalb_Chr18g0044551 Lupinus albus HOM05D002242 ORTHO05D002275 3.9e-11 73.2 118 41.5
Sopen01g039800 Solanum pennellii HOM05D002242 ORTHO05D002275 3.9e-11 73.2 155 36.1
Dinv37328 Davidia involucrata HOM05D002242 ORTHO05D002275 5.0e-11 72.8 106 39.6
Nitab4.5_0003046g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 6.6e-11 72.4 156 35.3
Psat4g214600 Pisum sativum HOM05D002242 ORTHO05D002275 6.6e-11 72.4 86 46.5
Oeu043226.1 Olea europaea HOM05D002242 ORTHO05D002275 1.1e-10 71.6 299 28.4
Peaxi162Scf00716g00032 Petunia axillaris HOM05D000078 ORTHO05D000025 1.5e-10 71.2 183 29.5
Potri.015G011900 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.9e-10 70.9 91 47.3
Solyc01g096080.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 1.9e-10 70.9 155 36.8
COL.COLO4_16773 Corchorus olitorius HOM05D002242 ORTHO05D002275 2.5e-10 70.5 140 37.1
Manes.01G184600 Manihot esculenta HOM05D002242 ORTHO05D002275 2.5e-10 70.5 82 45.1
Migut.O00897 Erythranthe guttata HOM05D002242 ORTHO05D002275 3.3e-10 70.1 99 44.4
Glyma.19G257000 Glycine max HOM05D002242 ORTHO05D002275 3.3e-10 70.1 92 44.6
Lalb_Chr10g0100621 Lupinus albus HOM05D002242 ORTHO05D002275 3.3e-10 70.1 88 46.6
TWI59G0079 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 3.3e-10 70.1 140 40.0
PSO782G1347 Papaver somniferum HOM05D002242 ORTHO05D002275 4.3e-10 69.7 302 32.5
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 4.3e-10 69.7 126 37.3
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 7.3e-10 68.9 321 28.3
TPR.G4734 Trifolium pratense HOM05D002242 ORTHO05D002275 7.3e-10 68.9 90 46.7
Psat3g001920 Pisum sativum HOM05D002242 ORTHO05D002275 9.5e-10 68.6 124 38.7
Dinv29268 Davidia involucrata HOM05D002242 ORTHO05D002275 1.6e-09 67.8 162 36.4
Sabra15G0009600 Salix brachista HOM05D002242 ORTHO05D002275 1.6e-09 67.8 139 36.7
CAN.G1415.21 Capsicum annuum HOM05D002242 ORTHO05D002275 2.1e-09 67.4 157 35.7
AUR62004507 Chenopodium quinoa HOM05D002242 ORTHO05D002275 2.1e-09 67.4 103 39.8
Ciclev10021848m.g Citrus clementina HOM05D002242 ORTHO05D002275 2.1e-09 67.4 124 41.1
EL10Ac1g00249 Beta vulgaris HOM05D002242 ORTHO05D002275 2.8e-09 67.0 114 41.2
Cfa016239 Carpinus fangiana HOM05D002242 ORTHO05D002275 3.6e-09 66.6 120 39.2
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 3.6e-09 66.6 80 46.2
Nitab4.5_0001763g0050 Nicotiana tabacum HOM05D002242 ORTHO05D002275 3.6e-09 66.6 160 32.5
Sed0026965 Sechium edule HOM05D002242 ORTHO05D002275 3.6e-09 66.6 128 38.3
Duzib205G1627 Durio zibethinus HOM05D002242 ORTHO05D002275 8.0e-09 65.5 122 37.7
vmacro13169 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 8.0e-09 65.5 124 37.9
Duzib084G0563 Durio zibethinus HOM05D002242 ORTHO05D002275 1.1e-08 65.1 144 36.1
Nitab4.5_0007888g0030 Nicotiana tabacum HOM05D002242 ORTHO05D002275 1.1e-08 65.1 163 31.9
ClCG05G000740 Citrullus lanatus HOM05D002242 ORTHO05D002275 1.4e-08 64.7 125 40.0
Haze_00202 Corylus avellana HOM05D002242 ORTHO05D002275 1.4e-08 64.7 118 38.1
PSO478G1176 Papaver somniferum HOM05D002242 ORTHO05D002275 1.4e-08 64.7 306 31.4
EL10Ac3g05266 Beta vulgaris HOM05D002242 ORTHO05D002275 2.3e-08 63.9 83 44.6
arahy.Tifrunner.gnm1.ann1.NAPQ43 Arachis hypogaea HOM05D002242 ORTHO05D002275 3.1e-08 63.5 68 51.5
arahy.Tifrunner.gnm1.ann1.S82JHH Arachis hypogaea HOM05D002242 ORTHO05D002275 3.1e-08 63.5 110 40.9
CSS0021112 Camellia sinensis var. sinensis HOM05D002242 ORTHO05D002275 3.1e-08 63.5 176 34.7
Sed0004473 Sechium edule HOM05D002242 ORTHO05D002275 3.1e-08 63.5 124 36.3
Hund27189 Selenicereus undatus HOM05D002242 ORTHO05D002275 4.0e-08 63.2 131 39.7
Sc25g0000930 Simmondsia chinensis HOM05D002242 ORTHO05D002275 4.0e-08 63.2 85 42.4
TPR.G20223 Trifolium pratense HOM05D002242 ORTHO05D002275 4.0e-08 63.2 87 42.5
CsaV3_3G007960 Cucumis sativus L. HOM05D002242 ORTHO05D002275 5.2e-08 62.8 199 31.2
Aqoxy4G02751 Aquilegia oxysepala HOM05D002242 ORTHO05D002275 6.8e-08 62.4 123 39.8
Migut.N01536 Erythranthe guttata HOM05D002242 ORTHO05D002275 6.8e-08 62.4 135 32.6
MBI06_g38007_MAGBIO Magnolia biondii HOM05D002242 ORTHO05D002275 6.8e-08 62.4 180 28.3
Rhsim07G0003200 Rhododendron simsii HOM05D002242 ORTHO05D002275 8.9e-08 62.0 59 54.2
Carub.0006s3599 Capsella rubella HOM05D002242 ORTHO05D002275 1.2e-07 61.6 310 26.8
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 1.5e-07 61.2 86 41.9
Sc01g0002560 Simmondsia chinensis HOM05D002242 ORTHO05D002275 1.5e-07 61.2 97 45.4
ECA234G4607 Erigeron canadensis HOM05D002242 ORTHO05D002275 2.0e-07 60.8 62 51.6
Oeu007879.1 Olea europaea HOM05D002242 ORTHO05D002275 2.0e-07 60.8 294 25.9
MELO3C006014.2 Cucumis melo HOM05D002242 ORTHO05D002275 2.6e-07 60.5 124 34.7
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 3.4e-07 60.1 318 31.8
HanXRQChr17g0563391 Helianthus annuus HOM05D002242 ORTHO05D002275 3.4e-07 60.1 123 36.6
MD07G1286900 Malus domestica HOM05D002242 ORTHO05D002275 5.8e-07 59.3 133 36.8
SalBow5G1307 Salvia bowleyana HOM05D002242 ORTHO05D002275 7.5e-07 58.9 131 38.2
THA.LOC104817373 Tarenaya hassleriana HOM05D010353 ORTHO05D011141 7.5e-07 58.9 73 46.6
Nitab4.5_0005514g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 1.3e-06 58.2 81 40.7
THA.LOC104825883 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 2.2e-06 57.4 317 30.9
Gohir.D03G115200 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.9e-06 57.0 115 36.5
Potri.012G016700 Populus trichocarpa HOM05D002242 ORTHO05D002275 2.9e-06 57.0 124 36.3
QL09p008666 Quercus lobata HOM05D002242 ORTHO05D002275 2.9e-06 57.0 102 40.2
Aa31LG5G990 Aethionema arabicum HOM05D002242 ORTHO05D002275 3.7e-06 56.6 294 27.2
MD01G1217700 Malus domestica HOM05D002242 ORTHO05D002275 3.7e-06 56.6 85 43.5
Sp4g28580 Schrenkiella parvula HOM05D010353 ORTHO05D011141 3.7e-06 56.6 96 39.6
ClCG06G002630 Citrullus lanatus HOM05D002242 ORTHO05D002275 4.9e-06 56.2 110 41.8
Gorai.003G121500 Gossypium raimondii HOM05D002242 ORTHO05D002275 4.9e-06 56.2 115 36.5
Prupe.2G309000 Prunus persica HOM05D002242 ORTHO05D002275 4.9e-06 56.2 133 36.1
Sp6g01185 Schrenkiella parvula HOM05D002242 ORTHO05D002275 4.9e-06 56.2 312 27.9
BcaC02g12670 Brassica carinata HOM05D010353 ORTHO05D011141 6.4e-06 55.8 72 43.1
CiPaw.06G045500 Carya illinoinensis HOM05D002242 ORTHO05D002275 6.4e-06 55.8 143 36.4
Thhalv10001658m.g Eutrema salsugineum HOM05D010353 ORTHO05D011141 8.3e-06 55.5 96 38.5


User provided reference genes

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