Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 2.9e-109 398.7 214 100.0
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 5.4e-55 218.4 215 60.9
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 7.2e-52 208.0 214 62.6
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 1.6e-51 206.8 213 62.0
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 1.6e-51 206.8 213 62.0
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 1.6e-51 206.8 215 62.8
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.1e-51 206.5 214 55.1
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 1.4e-50 203.8 212 59.4
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 4.0e-50 202.2 206 61.7
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 5.2e-50 201.8 214 60.3
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.2e-49 200.7 214 60.7
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 3.4e-49 199.1 211 59.2
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 3.7e-48 195.7 201 61.7
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 3.7e-48 195.7 214 60.3
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 9.2e-47 191.0 211 59.7
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 2.0e-46 189.9 214 57.5
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 3.5e-46 189.1 208 56.2
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 4.5e-46 188.7 208 60.6
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 7.7e-46 188.0 212 57.5
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.0e-45 187.6 212 55.7
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.0e-45 185.3 207 57.0
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.0e-45 185.3 207 57.0
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.9e-44 183.3 216 57.9
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.9e-44 183.3 216 57.4
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 4.3e-44 182.2 208 60.1
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 5.6e-44 181.8 212 57.5
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 7.3e-44 181.4 215 53.0
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.5e-44 181.0 215 58.1
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 9.5e-44 181.0 215 58.1
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 9.5e-44 181.0 214 57.5
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 4.7e-43 178.7 212 55.7
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 4.7e-43 178.7 214 56.1
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.1e-43 178.3 215 57.7
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 6.1e-43 178.3 197 54.3
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 8.0e-43 177.9 214 54.7
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 1.4e-42 177.2 207 56.5
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.8e-42 176.8 210 59.0
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 3.0e-42 176.0 214 54.7
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.0e-42 176.0 210 56.7
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 4.0e-42 175.6 207 57.0
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 4.0e-42 175.6 207 57.0
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 5.2e-42 175.3 205 58.0
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 8.9e-42 174.5 213 54.5
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 1.2e-41 174.1 213 54.5
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 4.4e-41 172.2 202 58.9
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 9.8e-41 171.0 207 55.6
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 9.8e-41 171.0 213 55.4
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 8.3e-40 167.9 213 54.5
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.4e-39 167.2 214 55.6
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 2.4e-39 166.4 207 50.2
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 3.2e-39 166.0 196 52.0
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.2e-39 166.0 206 56.3
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 5.4e-39 165.2 211 53.1
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 9.2e-39 164.5 213 54.9
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 1.2e-38 164.1 213 51.6
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.2e-38 164.1 213 51.6
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.6e-38 163.7 213 51.6
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.6e-38 163.7 213 54.5
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.7e-38 162.9 196 51.0
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 3.5e-38 162.5 201 54.7
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.5e-38 162.5 213 54.0
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.5e-38 162.5 201 56.7
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.6e-38 162.2 213 51.2
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.6e-38 162.2 205 55.1
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.9e-38 161.8 213 51.2
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.7e-37 160.2 205 54.6
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.3e-37 159.8 206 56.8
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 3.0e-37 159.5 213 55.4
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 5.0e-37 158.7 206 54.9
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 5.0e-37 158.7 199 57.8
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 6.6e-37 158.3 196 56.6
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 8.6e-37 157.9 205 52.7
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 8.6e-37 157.9 205 54.6
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 1.1e-36 157.5 211 50.7
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.1e-36 157.5 205 54.6
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.3e-36 155.6 213 50.7
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 5.6e-36 155.2 195 49.7
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 5.6e-36 155.2 214 51.4
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 9.5e-36 154.5 196 53.6
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.6e-35 153.7 194 56.7
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 2.8e-35 152.9 216 50.0
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 6.2e-35 151.8 202 55.4
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.8e-34 150.2 214 48.1
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 4.0e-34 149.1 209 55.0
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 5.2e-34 148.7 202 52.5
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 5.2e-34 148.7 214 47.7
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.2e-33 147.5 202 54.0
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 1.5e-33 147.1 214 47.7
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.6e-33 146.4 202 54.5
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 3.4e-33 146.0 200 48.5
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 7.5e-33 144.8 188 52.7
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 9.8e-33 144.4 214 46.3
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 2.2e-32 143.3 217 49.3
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 6.4e-32 141.7 214 46.7
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 8.3e-32 141.4 216 47.7
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 1.1e-31 141.0 147 55.1
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 3.2e-31 139.4 205 53.7
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 4.1e-31 139.0 215 46.0
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 5.4e-31 138.7 214 50.5
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 7.0e-31 138.3 205 47.8
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 9.2e-31 137.9 216 46.8
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 9.2e-31 137.9 214 49.1
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 2.0e-30 136.7 203 53.7
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 3.5e-30 136.0 194 49.0
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.5e-30 136.0 211 49.8
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 4.6e-30 135.6 207 48.8
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 6.0e-30 135.2 199 48.2
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 1.3e-29 134.0 195 52.8
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 1.3e-29 134.0 185 52.4
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 1.7e-29 133.7 212 47.2
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.7e-29 133.7 180 52.8
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 2.3e-29 133.3 209 50.7
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 3.0e-29 132.9 198 48.0
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 3.9e-29 132.5 202 45.0
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 3.9e-29 132.5 205 48.8
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 5.0e-29 132.1 215 42.8
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 5.0e-29 132.1 205 46.8
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 5.0e-29 132.1 200 44.0
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 2.5e-28 129.8 277 39.0
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 3.3e-28 129.4 198 46.5
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 3.3e-28 129.4 201 45.8
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 5.6e-28 128.6 216 45.4
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 5.6e-28 128.6 195 46.7
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 5.6e-28 128.6 266 39.1
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 7.3e-28 128.3 205 48.3
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.2e-27 127.5 201 48.8
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 1.2e-27 127.5 210 43.3
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 2.1e-27 126.7 219 45.2
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 2.8e-27 126.3 208 49.5
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.8e-27 126.3 106 78.3
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 4.7e-27 125.6 205 48.3
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 8.1e-27 124.8 200 48.0
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.1e-26 124.4 213 44.6
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.8e-26 123.6 200 51.5
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 3.1e-26 122.9 206 50.5
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 4.0e-26 122.5 198 44.4
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 8.9e-26 121.3 200 50.5
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 2.6e-25 119.8 217 44.7
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 5.8e-25 118.6 217 48.4
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 7.5e-25 118.2 193 48.7
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 1.7e-24 117.1 207 48.3
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 2.2e-24 116.7 205 48.3
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.7e-24 115.9 213 42.3
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 3.7e-24 115.9 205 46.8
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 8.3e-24 114.8 193 50.3
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.1e-23 114.4 204 41.7
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.4e-23 114.0 196 46.4
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.4e-23 113.2 204 41.7
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 5.4e-23 112.1 206 44.7
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 1.2e-22 110.9 207 48.3
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 2.1e-22 110.2 207 43.5
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 3.5e-22 109.4 206 44.7
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 4.6e-22 109.0 106 72.6
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 4.6e-22 109.0 99 74.7
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.6e-22 109.0 199 43.2
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 1.3e-21 107.5 102 59.8
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.7e-21 107.1 221 45.7
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.3e-21 106.7 203 40.9
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 5.1e-21 105.5 208 49.0
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 8.6e-21 104.8 106 62.3
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 8.6e-21 104.8 106 62.3
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.5e-20 104.0 93 67.7
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 2.1e-19 100.1 257 39.3
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 2.8e-19 99.8 201 44.3
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 3.6e-19 99.4 84 66.7
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 8.1e-19 98.2 208 41.3
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 8.1e-19 98.2 211 40.3
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.1e-18 97.8 194 44.8
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 1.8e-18 97.1 167 50.3
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 5.2e-18 95.5 199 41.7
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.5e-17 94.0 199 42.2
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 4.4e-17 92.4 118 60.2
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 6.4e-16 88.6 77 67.5
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 7.8e-14 81.6 204 41.2
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 2.5e-12 76.6 208 41.3
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 2.5e-12 76.6 202 40.1
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 9.6e-12 74.7 132 37.1
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 6.9e-10 68.6 136 36.8
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 1.2e-09 67.8 219 39.7
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 9.9e-09 64.7 211 37.4
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 4.9e-08 62.4 210 38.6
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 6.4e-08 62.0 105 49.5
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 8.4e-08 61.6 53 69.8


User provided reference genes

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