Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 4.9e-114 414.5 205 100.0
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 6.0e-88 327.8 198 77.8
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 6.2e-85 317.8 198 75.3
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 8.1e-85 317.4 198 76.3
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.8e-84 316.2 198 75.3
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 2.4e-84 315.8 198 74.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.3e-84 314.7 198 73.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 5.3e-84 314.7 198 73.7
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 6.9e-84 314.3 198 74.2
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 6.9e-84 314.3 198 74.2
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 9.0e-84 313.9 198 73.2
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 9.0e-84 313.9 198 71.7
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.2e-83 313.5 198 73.2
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.2e-83 313.5 198 74.2
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 2.0e-83 312.8 198 72.7
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 5.8e-83 311.2 198 75.3
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 5.8e-83 311.2 198 73.7
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.7e-82 309.7 198 73.2
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 2.9e-82 308.9 198 70.2
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 4.9e-82 308.1 198 70.7
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 4.9e-82 308.1 198 71.7
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 6.4e-82 307.8 198 70.7
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 8.4e-82 307.4 198 71.2
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.4e-81 306.6 198 73.2
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.4e-81 306.6 198 73.2
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.9e-81 306.2 198 72.2
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.2e-80 303.5 198 71.2
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 4.6e-80 301.6 198 71.7
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 6.0e-80 301.2 198 71.2
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 71.2
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 3.9e-79 298.5 198 69.7
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 8.7e-79 297.4 200 71.5
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 69.7
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 69.7
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 66.2
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 3.3e-78 295.4 199 70.9
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 5.6e-78 294.7 198 70.2
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 7.4e-78 294.3 198 67.2
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 7.4e-78 294.3 199 70.9
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 9.6e-78 293.9 198 68.7
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 9.6e-78 293.9 198 69.7
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 9.6e-78 293.9 198 69.7
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.3e-77 293.5 198 68.2
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 68.7
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 2.1e-77 292.7 200 66.0
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 2.8e-77 292.4 198 69.2
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 2.8e-77 292.4 198 69.7
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 4.8e-77 291.6 216 66.7
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 6.2e-77 291.2 207 66.2
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 8.1e-77 290.8 198 67.2
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.8e-76 289.7 198 68.7
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.4e-76 289.3 198 67.2
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 2.4e-76 289.3 198 68.2
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 2.4e-76 289.3 198 65.7
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 4.0e-76 288.5 198 65.2
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 6.9e-76 287.7 198 64.6
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 6.9e-76 287.7 205 65.4
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 9.0e-76 287.3 198 64.6
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.0e-76 287.3 206 64.6
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 9.0e-76 287.3 198 67.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-75 287.0 198 65.7
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 4.5e-75 285.0 198 65.7
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 4.5e-75 285.0 198 64.6
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 4.5e-75 285.0 198 64.6
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 5.8e-75 284.6 198 65.7
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 5.8e-75 284.6 198 66.2
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.9e-75 283.9 199 66.3
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 65.7
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 1.3e-74 283.5 176 75.6
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.3e-74 283.5 205 64.9
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.7e-74 283.1 198 66.2
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 2.2e-74 282.7 198 64.1
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 2.2e-74 282.7 198 66.7
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 2.2e-74 282.7 198 66.2
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 2.9e-74 282.3 198 65.7
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 2.9e-74 282.3 198 64.1
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.9e-74 282.3 198 65.2
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 6.4e-74 281.2 203 63.1
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 6.4e-74 281.2 198 63.6
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 6.4e-74 281.2 198 64.1
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 65.2
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 2.4e-73 279.3 201 64.2
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 2.1e-72 276.2 198 63.6
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 3.5e-72 275.4 255 54.5
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 4.6e-72 275.0 198 63.1
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.0e-71 273.9 198 63.1
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.0e-71 273.9 170 75.9
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.3e-71 273.5 234 56.8
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.3e-71 273.5 241 57.7
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.3e-71 273.5 236 56.4
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.8e-71 273.1 234 56.4
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 5.1e-71 271.6 216 58.8
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 5.1e-71 271.6 233 58.8
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 8.7e-71 270.8 219 58.0
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 5.6e-70 268.1 171 70.2
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 7.4e-70 267.7 198 62.1
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.4e-68 263.5 199 63.8
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 3.4e-67 258.8 173 68.8
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 2.9e-66 255.8 180 64.4
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 4.2e-65 251.9 155 72.3
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.5e-65 251.5 188 64.4
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.3e-63 246.9 170 67.1
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 9.6e-62 240.7 191 60.7
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 2.8e-61 239.2 160 70.0
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 5.3e-60 235.0 167 67.1
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 6.9e-60 234.6 198 56.6
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 5.9e-59 231.5 198 59.1
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 5.9e-59 231.5 198 53.5
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.5e-54 216.9 198 54.5
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 2.5e-54 216.1 198 49.0
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.3e-53 213.8 135 74.8
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 3.1e-52 209.1 145 62.8
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 9.1e-52 207.6 198 48.0
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 8.5e-50 201.1 202 47.5
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 7.2e-49 198.0 133 65.4
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 2.3e-47 193.0 194 45.9
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 4.8e-45 185.3 130 66.9
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 8.2e-45 184.5 143 61.5
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 4.1e-44 182.2 192 54.2
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 2.6e-43 179.5 114 66.7
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 2.9e-42 176.0 160 51.2
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 8.5e-42 174.5 114 64.9
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 1.6e-40 170.2 114 68.4
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 2.1e-40 169.9 114 63.2
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 3.7e-37 159.1 110 70.9
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 1.8e-36 156.8 143 49.0
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 5.3e-36 155.2 143 52.4
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.2e-33 146.0 113 49.6
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 7.2e-33 144.8 113 48.7
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 7.5e-30 134.8 86 65.1
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 2.4e-28 129.8 145 41.4
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.0e-26 124.4 77 81.8
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 2.2e-26 123.2 83 74.7
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 3.8e-26 122.5 114 54.4
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 9.4e-25 117.9 77 79.2
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.2e-24 117.5 77 77.9
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 2.3e-23 113.2 75 74.7
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 3.0e-23 112.8 77 74.0
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.2e-22 110.9 77 72.7
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 3.4e-22 109.4 77 72.7
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 3.4e-22 109.4 77 72.7
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 9.8e-22 107.8 59 76.3
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.3e-21 107.5 69 78.3
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.2e-21 106.7 77 66.2
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 5.4e-20 102.1 71 64.8
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.5e-19 99.0 75 66.7
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 6.5e-18 95.1 81 59.3
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 1.9e-17 93.6 99 43.4
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 9.5e-17 91.3 72 65.3
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 1.6e-16 90.5 55 70.9
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.6e-16 90.5 145 41.4
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 3.6e-16 89.4 65 66.2
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 1.2e-14 84.3 191 27.7
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 1.8e-12 77.0 56 53.6
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 4.1e-12 75.9 64 56.2
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 7.0e-12 75.1 57 56.1
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 4.5e-11 72.4 119 35.3
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 1.0e-10 71.2 63 44.4
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.7e-10 70.5 46 78.3
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 2.9e-10 69.7 57 52.6
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 2.9e-10 69.7 47 59.6
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.9e-09 67.0 55 56.4
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.5e-09 66.6 69 47.8
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 4.0e-07 59.3 46 63.0


User provided reference genes

Program Settings