Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 2.4e-76 288.9 158 100.0
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 1.0e-66 256.9 157 88.5
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.1e-65 253.4 157 86.6
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 4.2e-65 251.5 157 85.4
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 1.4e-63 246.5 157 84.7
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 3.0e-63 245.4 154 87.0
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.9e-63 245.0 157 84.1
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 5.1e-63 244.6 154 85.1
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 5.1e-63 244.6 154 85.1
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.5e-62 243.0 157 82.8
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 2.0e-62 242.7 154 85.1
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 2.6e-62 242.3 154 85.1
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.6e-62 242.3 157 82.8
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.6e-62 242.3 157 82.8
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.6e-62 242.3 157 82.8
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 2.6e-62 242.3 157 82.8
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 3.3e-62 241.9 153 86.3
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 4.4e-62 241.5 154 86.4
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 7.4e-62 240.7 154 83.8
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.7e-61 239.6 154 84.4
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 2.2e-61 239.2 153 85.6
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 6.3e-61 237.7 152 84.2
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 8.2e-61 237.3 154 83.1
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.1e-60 236.9 151 83.4
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.1e-60 236.9 154 83.8
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 1.8e-60 236.1 155 81.9
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.8e-60 236.1 154 83.8
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.4e-60 235.7 154 83.8
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 2.4e-60 235.7 151 82.1
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 3.1e-60 235.3 149 85.9
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 4.1e-60 235.0 149 85.2
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 5.3e-60 234.6 153 83.7
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 5.3e-60 234.6 148 85.1
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.6e-59 233.0 151 84.1
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 2.0e-59 232.6 150 82.0
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 2.6e-59 232.3 149 81.9
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 4.5e-59 231.5 149 82.6
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 5.9e-59 231.1 148 83.8
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 7.7e-59 230.7 155 79.4
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 7.7e-59 230.7 150 83.3
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 1.0e-58 230.3 151 80.8
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.0e-58 230.3 151 80.8
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.0e-58 230.3 151 80.8
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 1.0e-58 230.3 151 83.4
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.3e-58 229.9 151 82.8
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.3e-58 229.9 154 81.2
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 2.2e-58 229.2 154 79.9
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 2.2e-58 229.2 154 81.8
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 2.2e-58 229.2 152 82.2
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.2e-58 229.2 151 80.1
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 2.2e-58 229.2 148 83.1
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 2.2e-58 229.2 151 81.5
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.2e-58 229.2 152 80.9
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 2.9e-58 228.8 147 84.4
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 3.8e-58 228.4 148 83.1
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 3.8e-58 228.4 151 80.8
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 5.0e-58 228.0 145 82.1
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 5.0e-58 228.0 154 81.2
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.1e-57 226.9 154 80.5
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 1.5e-57 226.5 154 79.9
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 1.5e-57 226.5 154 79.9
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 1.5e-57 226.5 154 79.9
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.5e-57 226.5 151 79.5
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 1.5e-57 226.5 158 78.5
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 2.5e-57 225.7 154 81.2
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 2.5e-57 225.7 154 79.9
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 3.2e-57 225.3 154 79.9
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 3.2e-57 225.3 155 78.1
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 3.2e-57 225.3 148 81.1
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 4.2e-57 224.9 154 79.2
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 4.2e-57 224.9 153 79.7
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 5.5e-57 224.6 154 80.5
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 7.2e-57 224.2 145 84.8
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 9.4e-57 223.8 154 79.9
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 1.2e-56 223.4 154 78.6
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 1.6e-56 223.0 154 78.6
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 2.7e-56 222.2 154 78.6
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 3.6e-56 221.9 148 79.7
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 4.7e-56 221.5 154 79.9
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 6.1e-56 221.1 153 77.8
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 8.0e-56 220.7 147 79.6
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 8.0e-56 220.7 147 79.6
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 8.0e-56 220.7 145 84.1
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.0e-55 220.3 155 79.4
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.4e-55 219.9 152 79.6
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.8e-55 219.5 154 77.9
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 3.0e-55 218.8 154 77.3
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 4.0e-55 218.4 153 78.4
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 8.8e-55 217.2 152 78.3
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 1.1e-54 216.9 153 75.2
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 1.5e-54 216.5 153 76.5
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 2.6e-54 215.7 150 78.0
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 2.6e-54 215.7 148 78.4
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 3.3e-54 215.3 153 75.2
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 2.8e-53 212.2 151 76.8
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.8e-53 212.2 184 65.8
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.1e-52 210.3 152 75.0
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.4e-52 209.9 151 74.8
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.8e-52 209.5 151 76.2
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 2.4e-52 209.1 154 76.6
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.2e-51 206.8 148 74.3
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 2.0e-51 206.1 159 72.3
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 2.7e-51 205.7 147 78.9
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 3.5e-51 205.3 190 64.2
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 3.5e-51 205.3 148 73.6
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.7e-50 203.0 148 73.0
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.1e-49 200.3 168 67.9
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 2.5e-49 199.1 155 73.5
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 3.0e-47 192.2 139 77.7
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 4.0e-47 191.8 125 83.2
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.0e-46 189.5 203 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 3.7e-45 185.3 149 67.1
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 6.3e-45 184.5 144 67.4
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 1.1e-44 183.7 127 78.0
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 7.0e-44 181.0 151 68.2
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 4.0e-39 165.2 121 75.2
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.2e-38 163.7 154 61.7
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 1.2e-38 163.7 137 64.2
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 1.3e-34 150.2 97 83.5
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 6.6e-34 147.9 126 66.7
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.2e-32 143.7 99 79.8
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 1.0e-31 140.6 117 68.4
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 2.3e-31 139.4 135 61.5
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 3.0e-31 139.0 105 73.3
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 5.0e-26 121.7 160 53.1
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 5.8e-22 108.2 72 76.4
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 6.4e-21 104.8 123 48.0
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 9.2e-20 100.9 107 58.9
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 1.0e-18 97.4 128 52.3
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 2.3e-18 96.3 104 60.6
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 8.6e-18 94.4 93 63.4
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.5e-17 93.6 81 69.1
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 3.6e-16 89.0 53 86.8
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 3.6e-16 89.0 65 75.4
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.8e-15 86.7 55 80.0
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.3e-15 86.3 55 80.0
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 3.1e-15 85.9 82 62.2
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 1.2e-11 73.9 54 66.7
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.5e-09 67.0 64 57.8
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.9e-09 66.6 40 80.0
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 1.2e-08 63.9 46 69.6
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 5.8e-06 55.1 86 43.0


User provided reference genes

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