Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 1.0e-45 186.4 99 100.0
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 3.7e-19 98.2 90 60.0
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 4.1e-18 94.7 100 57.0
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 4.1e-18 94.7 100 58.0
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 5.4e-18 94.4 100 56.0
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 6.0e-17 90.9 102 55.9
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 1.3e-16 89.7 92 56.5
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.7e-16 89.4 95 53.7
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.3e-16 89.0 99 51.5
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 3.0e-16 88.6 92 54.3
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 3.0e-16 88.6 92 57.6
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 3.9e-16 88.2 90 56.7
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 3.9e-16 88.2 97 55.7
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 5.0e-16 87.8 100 51.0
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.1e-15 86.7 102 50.0
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 1.9e-15 85.9 96 53.1
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.9e-15 85.9 102 53.9
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 1.9e-15 85.9 91 51.6
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 3.3e-15 85.1 92 51.1
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 3.3e-15 85.1 92 55.4
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 3.3e-15 85.1 98 57.1
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 4.3e-15 84.7 97 55.7
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 4.3e-15 84.7 97 55.7
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 4.3e-15 84.7 104 50.0
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 7.3e-15 84.0 99 52.5
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 7.3e-15 84.0 100 48.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 9.5e-15 83.6 99 48.5
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 1.2e-14 83.2 94 51.1
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 1.2e-14 83.2 90 52.2
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.2e-14 83.2 102 50.0
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.2e-14 83.2 101 51.5
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.6e-14 82.8 94 52.1
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.1e-14 82.4 100 50.0
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 2.1e-14 82.4 99 48.5
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 2.8e-14 82.0 102 47.1
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 3.6e-14 81.6 104 51.9
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 6.2e-14 80.9 105 47.6
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.1e-14 80.5 100 46.0
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 8.1e-14 80.5 90 51.1
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 8.1e-14 80.5 93 51.6
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.1e-13 80.1 104 51.0
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.1e-13 80.1 99 46.5
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.4e-13 79.7 96 52.1
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 1.8e-13 79.3 104 52.9
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.8e-13 79.3 100 49.0
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 2.3e-13 79.0 94 55.3
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 2.3e-13 79.0 85 55.3
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.1e-13 78.6 104 51.0
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.1e-13 78.6 104 52.9
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.1e-13 78.6 104 52.9
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.1e-13 78.6 100 51.0
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 4.0e-13 78.2 95 52.6
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.0e-13 78.2 100 45.0
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 4.0e-13 78.2 100 45.0
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 5.2e-13 77.8 99 45.5
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 5.2e-13 77.8 104 50.0
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 6.8e-13 77.4 104 45.2
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 6.8e-13 77.4 58 65.5
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.8e-13 77.4 104 51.9
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.8e-13 77.4 104 51.9
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 6.8e-13 77.4 101 49.5
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 8.9e-13 77.0 92 50.0
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 8.9e-13 77.0 99 45.5
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 2.0e-12 75.9 107 47.7
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 2.6e-12 75.5 101 46.5
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 2.6e-12 75.5 56 66.1
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 3.4e-12 75.1 59 66.1
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 3.4e-12 75.1 97 47.4
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 3.4e-12 75.1 69 58.0
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 5.8e-12 74.3 94 46.8
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 7.5e-12 73.9 106 47.2
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 7.5e-12 73.9 108 47.2
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.5e-12 73.9 79 48.1
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 9.9e-12 73.6 81 58.0
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 9.9e-12 73.6 99 48.5
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 2.9e-11 72.0 95 42.1
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 3.7e-11 71.6 101 45.5
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 3.7e-11 71.6 106 47.2
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 8.3e-11 70.5 60 61.7
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.9e-10 69.3 105 42.9
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 1.9e-10 69.3 103 45.6
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.2e-10 68.6 101 44.6
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 4.1e-10 68.2 100 44.0
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 4.1e-10 68.2 106 45.3
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 7.1e-10 67.4 106 42.5
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 9.2e-10 67.0 105 42.9
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 1.2e-09 66.6 106 42.5
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 1.2e-09 66.6 106 42.5
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.2e-09 66.6 104 44.2
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 2.1e-09 65.9 107 42.1
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 2.1e-09 65.9 107 42.1
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 2.7e-09 65.5 56 57.1
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 2.7e-09 65.5 106 43.4
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 4.6e-09 64.7 94 46.8
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.6e-09 64.7 104 44.2
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 6.0e-09 64.3 107 42.1
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 6.0e-09 64.3 107 42.1
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 6.0e-09 64.3 107 42.1
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 7.8e-09 63.9 107 42.1
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 7.8e-09 63.9 107 42.1
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 7.8e-09 63.9 107 42.1
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 7.8e-09 63.9 108 41.7
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 1.0e-08 63.5 99 42.4
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.3e-08 63.2 107 43.9
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 1.3e-08 63.2 79 57.0
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 1.3e-08 63.2 100 42.0
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 1.7e-08 62.8 57 56.1
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 3.0e-08 62.0 102 41.2
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 3.0e-08 62.0 80 42.5
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 3.9e-08 61.6 77 46.8
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 3.9e-08 61.6 57 59.6
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 5.1e-08 61.2 107 39.3
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 5.1e-08 61.2 102 40.2
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 5.1e-08 61.2 96 40.6
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 8.6e-08 60.5 103 43.7
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 8.6e-08 60.5 103 43.7
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 8.6e-08 60.5 103 43.7
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 8.6e-08 60.5 85 48.2
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.5e-07 59.7 84 46.4
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 1.9e-07 59.3 77 42.9
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.9e-07 59.3 73 53.4
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 1.9e-07 59.3 90 41.1
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 2.5e-07 58.9 97 40.2
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 2.5e-07 58.9 97 40.2
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 3.3e-07 58.5 103 42.7
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 3.3e-07 58.5 97 40.2
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 3.3e-07 58.5 103 42.7
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.6e-07 57.8 90 41.1
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 5.6e-07 57.8 103 41.7
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 9.5e-07 57.0 63 50.8
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 9.5e-07 57.0 95 41.1
Sp1g15090 Schrenkiella parvula HOM05D009829 ORTHO05D012418 9.5e-07 57.0 106 40.6
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 1.6e-06 56.2 97 37.1
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 1.6e-06 56.2 91 40.7
AT1G16950 Arabidopsis thaliana HOM05D009829 ORTHO05D012418 2.1e-06 55.8 104 36.5
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 2.1e-06 55.8 106 41.5
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 2.8e-06 55.5 100 43.0
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 3.6e-06 55.1 104 35.6
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 4.7e-06 54.7 62 53.2
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 6.2e-06 54.3 110 40.0
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 6.2e-06 54.3 97 38.1
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 8.1e-06 53.9 97 38.1


User provided reference genes

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