Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 4.3e-36 154.1 74 100.0
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 9.6e-28 126.3 71 83.1
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.4e-26 122.5 69 82.6
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.4e-26 122.5 69 79.7
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 1.4e-26 122.5 67 80.6
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 1.8e-26 122.1 74 79.7
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.8e-26 122.1 71 81.7
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 2.4e-26 121.7 75 78.7
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 3.1e-26 121.3 71 77.5
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 6.9e-26 120.2 71 78.9
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 6.9e-26 120.2 67 80.6
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.6e-25 118.2 59 88.1
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 2.6e-25 118.2 74 77.0
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 3.4e-25 117.9 74 78.4
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 3.4e-25 117.9 74 78.4
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 3.4e-25 117.9 74 78.4
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 3.4e-25 117.9 73 76.7
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 7.6e-25 116.7 73 75.3
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 9.9e-25 116.3 73 75.3
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.3e-24 115.9 72 77.8
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 2.2e-24 115.2 74 75.7
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 2.2e-24 115.2 74 77.0
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 4.9e-24 114.0 70 74.3
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 6.4e-24 113.6 74 74.3
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 8.4e-24 113.2 61 80.3
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 8.4e-24 113.2 59 83.1
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.1e-23 112.8 59 84.7
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 1.1e-23 112.8 57 87.7
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 1.1e-23 112.8 57 87.7
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 1.1e-23 112.8 73 74.0
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 1.4e-23 112.5 69 71.0
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 1.9e-23 112.1 72 75.0
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 1.9e-23 112.1 73 72.6
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 5.4e-23 110.5 72 72.2
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 7.1e-23 110.2 59 83.1
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 7.1e-23 110.2 57 86.0
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 7.1e-23 110.2 57 86.0
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 7.1e-23 110.2 57 86.0
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 9.3e-23 109.8 59 84.7
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 1.6e-22 109.0 57 86.0
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 2.7e-22 108.2 66 69.7
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 4.6e-22 107.5 72 68.1
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 4.6e-22 107.5 72 68.1
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 4.6e-22 107.5 70 68.6
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 4.6e-22 107.5 70 65.7
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 7.8e-22 106.7 71 67.6
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 7.8e-22 106.7 71 67.6
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 7.8e-22 106.7 71 67.6
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 7.8e-22 106.7 71 67.6
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 7.8e-22 106.7 71 67.6
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 7.8e-22 106.7 66 69.7
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.0e-21 106.3 71 67.6
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 1.0e-21 106.3 73 71.2
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 1.0e-21 106.3 53 88.7
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.3e-21 105.9 71 66.2
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 1.3e-21 105.9 73 65.8
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.3e-21 105.9 74 64.9
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 1.7e-21 105.5 70 70.0
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.7e-21 105.5 54 83.3
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 1.7e-21 105.5 54 85.2
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.7e-21 105.5 66 71.2
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 2.3e-21 105.1 73 65.8
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 2.3e-21 105.1 70 70.0
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 3.0e-21 104.8 71 73.2
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 3.0e-21 104.8 71 73.2
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.0e-21 104.8 71 66.2
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 3.0e-21 104.8 71 64.8
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 3.0e-21 104.8 71 69.0
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 3.0e-21 104.8 52 88.5
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 3.0e-21 104.8 70 68.6
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 3.9e-21 104.4 72 66.7
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.9e-21 104.4 54 83.3
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 5.1e-21 104.0 73 65.8
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 5.1e-21 104.0 73 65.8
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 5.1e-21 104.0 73 65.8
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 5.1e-21 104.0 72 66.7
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 5.1e-21 104.0 61 75.4
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 6.6e-21 103.6 72 65.3
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 8.7e-21 103.2 73 64.4
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 8.7e-21 103.2 75 68.0
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 1.1e-20 102.8 72 65.3
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.1e-20 102.8 74 67.6
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.5e-20 102.4 74 66.2
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 1.9e-20 102.1 74 63.5
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 1.9e-20 102.1 67 70.1
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 1.9e-20 102.1 62 74.2
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 3.3e-20 101.3 74 66.2
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 3.3e-20 101.3 74 66.2
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 7.3e-20 100.1 67 70.1
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 7.3e-20 100.1 74 66.2
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 1.3e-19 99.4 73 69.9
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 2.1e-19 98.6 58 74.1
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 2.8e-19 98.2 54 79.6
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 2.8e-19 98.2 74 68.9
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 2.8e-19 98.2 74 68.9
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 4.8e-19 97.4 66 66.7
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 8.1e-19 96.7 55 78.2
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 8.1e-19 96.7 47 91.5
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 8.1e-19 96.7 55 78.2
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 1.1e-18 96.3 67 70.1
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.4e-18 95.9 64 70.3
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 1.4e-18 95.9 55 78.2
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 1.8e-18 95.5 66 69.7
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 2.4e-18 95.1 46 91.3
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 6.9e-18 93.6 55 76.4
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 2.0e-17 92.0 75 61.3
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.7e-16 89.0 75 60.0
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.2e-16 88.6 47 83.0
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 6.4e-16 87.0 72 58.3
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 1.9e-15 85.5 47 78.7
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 3.2e-15 84.7 55 69.1
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 7.1e-15 83.6 48 75.0
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.2e-14 82.8 55 65.5
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 2.7e-14 81.6 60 65.0
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 7.9e-14 80.1 49 67.3
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 7.9e-14 80.1 58 60.3
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.9e-12 75.5 54 59.3
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 3.3e-12 74.7 49 63.3
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 1.3e-11 72.8 48 62.5
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 1.6e-11 72.4 37 81.1
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 8.1e-11 70.1 55 54.5
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 1.4e-10 69.3 54 59.3
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.8e-10 68.9 45 68.9
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 5.3e-10 67.4 55 56.4
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 4.5e-09 64.3 30 86.7
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 1.3e-08 62.8 58 51.7
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 1.3e-08 62.8 58 51.7
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 8.4e-08 60.1 59 47.5
Zm00001eb341140 Zea mays HOM05D005857 ORTHO05D007193 2.1e-06 55.5 49 59.2
Actinidia00143 Actinidia chinensis HOM05D005857 ORTHO05D007193 7.9e-06 53.5 27 92.6


User provided reference genes

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