Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2891 Punica granatum HOM05D004912 ORTHO05D006144 3.4e-101 371.7 192 100.0
COL.COLO4_05030 Corchorus olitorius HOM05D004912 ORTHO05D006144 8.8e-25 117.9 196 38.3
Atru.chr13.2352 Acer truncatum HOM05D004912 ORTHO05D006144 6.3e-23 111.7 187 36.9
Dinv41750 Davidia involucrata HOM05D004912 ORTHO05D006144 8.3e-23 111.3 191 36.6
PGSC0003DMG400031411 Solanum tuberosum HOM05D004912 ORTHO05D006144 1.6e-21 107.1 188 35.1
Lj3g0019671 Lotus japonicus HOM05D004912 ORTHO05D006144 2.0e-21 106.7 188 36.7
QL02p026125 Quercus lobata HOM05D004912 ORTHO05D006144 2.7e-21 106.3 192 37.5
Nn5g27542 Nelumbo nucifera HOM05D004912 ORTHO05D006144 5.9e-21 105.1 198 38.4
Cfa012942 Carpinus fangiana HOM05D004912 ORTHO05D006144 2.3e-20 103.2 196 35.2
Nitab4.5_0007332g0020 Nicotiana tabacum HOM05D004912 ORTHO05D006144 5.0e-20 102.1 199 31.2
Nitab4.5_0001378g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 6.6e-20 101.7 188 33.0
Migut.C01310 Erythranthe guttata HOM05D004912 ORTHO05D006144 8.6e-20 101.3 193 35.2
PGR102G1759 Punica granatum HOM05D004912 ORTHO05D006144 8.6e-20 101.3 198 35.4
Gohir.D05G275200 Gossypium hirsutum HOM05D004912 ORTHO05D006144 1.1e-19 100.9 199 31.7
Haze_21297 Corylus avellana HOM05D004912 ORTHO05D006144 1.5e-19 100.5 196 35.7
Eucgr.F04115 Eucalyptus grandis HOM05D004912 ORTHO05D006144 1.5e-19 100.5 190 37.9
CiPaw.08G002400 Carya illinoinensis HOM05D004912 ORTHO05D006144 1.9e-19 100.1 197 35.5
Gorai.013G138700 Gossypium raimondii HOM05D004912 ORTHO05D006144 1.9e-19 100.1 205 36.6
Cpa.g.sc66.6 Carica papaya HOM05D004912 ORTHO05D006144 3.3e-19 99.4 192 36.5
MELO3C022195.2 Cucumis melo HOM05D004912 ORTHO05D006144 3.3e-19 99.4 194 33.5
CsaV3_5G040180 Cucumis sativus L. HOM05D004912 ORTHO05D006144 3.3e-19 99.4 194 34.0
Gohir.D13G123600 Gossypium hirsutum HOM05D004912 ORTHO05D006144 3.3e-19 99.4 198 36.9
Phvul.011G001700 Phaseolus vulgaris HOM05D004912 ORTHO05D006144 4.2e-19 99.0 192 37.5
Ca_27514_v3 Cicer arietinum L. HOM05D004912 ORTHO05D006144 5.5e-19 98.6 200 34.5
ClCG08G000690 Citrullus lanatus HOM05D004912 ORTHO05D006144 7.2e-19 98.2 192 33.9
Solyc11g022530.3 Solanum lycopersicum HOM05D004912 ORTHO05D006144 7.2e-19 98.2 188 34.0
Sopen11g011640 Solanum pennellii HOM05D004912 ORTHO05D006144 7.2e-19 98.2 188 33.5
Ciclev10001073m.g Citrus clementina HOM05D004912 ORTHO05D006144 9.5e-19 97.8 196 35.2
SGA_v2.0_scaffold118G32511 Striga asiatica HOM05D004912 ORTHO05D006144 1.2e-18 97.4 195 35.4
Glyma.08G239400 Glycine max HOM05D004912 ORTHO05D006144 2.1e-18 96.7 186 34.4
SalBow7G4664 Salvia bowleyana HOM05D004912 ORTHO05D006144 4.7e-18 95.5 186 33.3
Peaxi162Scf00154g00016 Petunia axillaris HOM05D004912 ORTHO05D006144 8.0e-18 94.7 199 30.7
Lj4A484T8 Lonicera japonica HOM05D004912 ORTHO05D006144 1.4e-17 94.0 194 34.5
Psat7g146280 Pisum sativum HOM05D004912 ORTHO05D006144 3.0e-17 92.8 181 35.4
Peaxi162Scf00798g00322 Petunia axillaris HOM05D004912 ORTHO05D006144 4.0e-17 92.4 201 31.3
Gohir.A13G119900 Gossypium hirsutum HOM05D004912 ORTHO05D006144 5.2e-17 92.0 206 35.0
VMungo1127G0246 Vigna mungo HOM05D004912 ORTHO05D006144 5.2e-17 92.0 192 33.3
arahy.Tifrunner.gnm1.ann1.NID8M3 Arachis hypogaea HOM05D004912 ORTHO05D006144 8.9e-17 91.3 193 33.2
arahy.Tifrunner.gnm1.ann1.Z6QD6J Arachis hypogaea HOM05D004912 ORTHO05D006144 1.5e-16 90.5 189 32.3
Glyma.12G001600 Glycine max HOM05D004912 ORTHO05D006144 1.5e-16 90.5 192 34.4
arahy.Tifrunner.gnm1.ann1.SX2JAI Arachis hypogaea HOM05D004912 ORTHO05D006144 2.6e-16 89.7 188 31.9
TAR376G1051 Trochodendron aralioides HOM05D004912 ORTHO05D006144 3.4e-16 89.4 184 31.5
Cc10_g10040 Coffea canephora HOM05D004912 ORTHO05D006144 4.4e-16 89.0 189 33.3
Manes.02G197100 Manihot esculenta HOM05D004912 ORTHO05D006144 4.4e-16 89.0 190 31.6
Medtr4g033230 Medicago truncatula HOM05D004912 ORTHO05D006144 4.4e-16 89.0 192 30.2
Medtr4g033265 Medicago truncatula HOM05D004912 ORTHO05D006144 4.4e-16 89.0 192 30.2
Sabra13G0093000 Salix brachista HOM05D004912 ORTHO05D006144 4.4e-16 89.0 198 33.8
Actinidia01557 Actinidia chinensis HOM05D004912 ORTHO05D006144 5.7e-16 88.6 193 31.1
ClCG11G008550 Citrullus lanatus HOM05D004912 ORTHO05D006144 5.7e-16 88.6 190 32.6
RcHm_v2.0_Chr7g0227991 Rosa chinensis HOM05D004912 ORTHO05D006144 7.5e-16 88.2 195 31.3
Manes.18G104400 Manihot esculenta HOM05D004912 ORTHO05D006144 9.8e-16 87.8 192 33.3
PGSC0003DMG400031323 Solanum tuberosum HOM05D004912 ORTHO05D006144 9.8e-16 87.8 209 31.6
Nitab4.5_0006163g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 1.3e-15 87.4 203 30.5
AUR62022650 Chenopodium quinoa HOM05D004912 ORTHO05D006144 2.2e-15 86.7 210 29.5
TWI23G1256 Tripterygium wilfordii HOM05D004912 ORTHO05D006144 2.2e-15 86.7 192 32.3
GSVIVG01001769001 Vitis vinifera HOM05D004912 ORTHO05D006144 2.8e-15 86.3 190 32.1
Oeu059194.1 Olea europaea HOM05D004912 ORTHO05D006144 3.7e-15 85.9 188 32.4
Sed0022690 Sechium edule HOM05D004912 ORTHO05D006144 1.1e-14 84.3 188 33.0
GSVIVG01001772001 Vitis vinifera HOM05D004912 ORTHO05D006144 1.4e-14 84.0 186 32.3
CANSAT25G2909 Cannabis sativa HOM05D004912 ORTHO05D006144 1.8e-14 83.6 190 33.2
FvH4_5g31970 Fragaria vesca HOM05D004912 ORTHO05D006144 1.8e-14 83.6 197 29.4
Prupe.1G554000 Prunus persica HOM05D004912 ORTHO05D006144 1.8e-14 83.6 195 31.3
Lsat_1_v5_gn_7_21041 Lactuca sativa HOM05D004912 ORTHO05D006144 3.1e-14 82.8 194 32.5
Nitab4.5_0005750g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 5.4e-14 82.0 200 30.0
MD15G1407700 Malus domestica HOM05D004912 ORTHO05D006144 7.0e-14 81.6 196 28.6
Aa31LG4G8550 Aethionema arabicum HOM05D004912 ORTHO05D006144 9.2e-14 81.3 193 30.6
DCAR_014078 Daucus carota HOM05D004912 ORTHO05D006144 9.2e-14 81.3 191 29.3
Ah.05g178460 Amaranthus hybridus HOM05D004912 ORTHO05D006144 1.2e-13 80.9 199 29.1
CAN.G308.42 Capsicum annuum HOM05D004912 ORTHO05D006144 1.2e-13 80.9 207 29.5
CAN.G635.17 Capsicum annuum HOM05D004912 ORTHO05D006144 1.2e-13 80.9 103 36.9
FAN18G2258 Fragaria x ananassa HOM05D004912 ORTHO05D006144 1.2e-13 80.9 197 28.9
PGSC0003DMG400031324 Solanum tuberosum HOM05D004912 ORTHO05D006144 1.2e-13 80.9 197 31.0
FAN04G2666 Fragaria x ananassa HOM05D004912 ORTHO05D006144 1.6e-13 80.5 191 27.2
HanXRQChr09g0260131 Helianthus annuus HOM05D004912 ORTHO05D006144 1.6e-13 80.5 196 32.1
AUR62004613 Chenopodium quinoa HOM05D004912 ORTHO05D006144 2.0e-13 80.1 199 29.6
Hund27105 Selenicereus undatus HOM05D004912 ORTHO05D006144 2.7e-13 79.7 194 31.4
Sopen06g023560 Solanum pennellii HOM05D004912 ORTHO05D006144 3.5e-13 79.3 194 29.9
MBI17_g01791_MAGBIO Magnolia biondii HOM05D004912 ORTHO05D006144 4.5e-13 79.0 191 30.9
EL10Ac1g00125 Beta vulgaris HOM05D004912 ORTHO05D006144 1.0e-12 77.8 214 27.1
unitig_748.g7733 Utricularia gibba HOM05D004912 ORTHO05D006144 1.0e-12 77.8 95 37.9
Aqoxy6G00063 Aquilegia oxysepala HOM05D004912 ORTHO05D006144 1.3e-12 77.4 186 31.2
AT1G22600 Arabidopsis thaliana HOM05D004912 ORTHO05D006144 1.3e-12 77.4 192 30.2
Solyc06g065050.2 Solanum lycopersicum HOM05D004912 ORTHO05D006144 6.6e-12 75.1 189 29.6
vmacro00991 Vaccinium macrocarpon HOM05D004912 ORTHO05D006144 6.6e-12 75.1 151 37.7
Lalb_Chr01g0000121 Lupinus albus HOM05D004912 ORTHO05D006144 8.6e-12 74.7 188 31.4
Oeu051787.1 Olea europaea HOM05D004912 ORTHO05D006144 8.6e-12 74.7 193 30.6
CSS0047311 Camellia sinensis var. sinensis HOM05D004912 ORTHO05D006144 1.1e-11 74.3 131 37.4
SGA_v2.0_scaffold19G08943 Striga asiatica HOM05D004912 ORTHO05D006144 1.1e-11 74.3 193 35.2
ECA232G1825 Erigeron canadensis HOM05D004912 ORTHO05D006144 1.5e-11 73.9 195 27.7
CARHR022970 Cardamine hirsuta HOM05D004912 ORTHO05D006144 2.5e-11 73.2 192 29.2
Sp1g20090 Schrenkiella parvula HOM05D004912 ORTHO05D006144 4.3e-11 72.4 192 29.7
Zm00001eb422690 Zea mays HOM05D004912 ORTHO05D006144 7.3e-11 71.6 202 28.7
CDE06G1282 Ceratophyllum demersum HOM05D004912 ORTHO05D006144 9.5e-11 71.2 193 29.0
arahy.Tifrunner.gnm1.ann1.9DDU7S Arachis hypogaea HOM05D004912 ORTHO05D006144 1.2e-10 70.9 191 28.3
BcaC03g15331 Brassica carinata HOM05D004912 ORTHO05D006144 1.2e-10 70.9 190 27.9
C02p29360 Brassica napus HOM05D004912 ORTHO05D006144 1.2e-10 70.9 190 27.9
BolC2t08987H Brassica oleracea HOM05D004912 ORTHO05D006144 1.2e-10 70.9 190 27.9
HPP92_005696 Vanilla planifolia HOM05D004912 ORTHO05D006144 1.6e-10 70.5 191 29.8
AL1G36130 Arabidopsis lyrata HOM05D004912 ORTHO05D006144 2.8e-10 69.7 192 28.6
A02p17660 Brassica napus HOM05D004912 ORTHO05D006144 4.7e-10 68.9 190 27.4
BraA02t06813Z Brassica rapa HOM05D004912 ORTHO05D006144 4.7e-10 68.9 190 27.4
BcaB05g24704 Brassica carinata HOM05D004912 ORTHO05D006144 6.1e-10 68.6 190 26.3
CARHR064910 Cardamine hirsuta HOM05D004912 ORTHO05D006144 6.1e-10 68.6 190 27.9
Carub.0001s2211 Capsella rubella HOM05D004912 ORTHO05D006144 8.0e-10 68.2 192 27.1
ATR1134G033 Amborella trichopoda HOM05D004912 ORTHO05D006144 1.0e-09 67.8 183 27.3
Lsat_1_v5_gn_1_26081 Lactuca sativa HOM05D004912 ORTHO05D006144 1.4e-09 67.4 91 40.7
Lalb_Chr19g0140481 Lupinus albus HOM05D004912 ORTHO05D006144 1.4e-09 67.4 85 43.5
Carub.0002s1888 Capsella rubella HOM05D004912 ORTHO05D006144 1.8e-09 67.0 190 27.4
unitig_32.g11185 Utricularia gibba HOM05D004912 ORTHO05D006144 1.8e-09 67.0 186 25.8
HanXRQChr11g0326311 Helianthus annuus HOM05D004912 ORTHO05D006144 3.1e-09 66.2 220 26.4
Thhalv10018523m.g Eutrema salsugineum HOM05D004912 ORTHO05D006144 5.2e-09 65.5 190 26.3
AT1G72100 Arabidopsis thaliana HOM05D004912 ORTHO05D006144 6.8e-09 65.1 190 26.8
Sp5g27160 Schrenkiella parvula HOM05D004912 ORTHO05D006144 6.8e-09 65.1 190 26.3
TAR628G1727 Trochodendron aralioides HOM05D004912 ORTHO05D006144 6.8e-09 65.1 89 40.4
AL2G31720 Arabidopsis lyrata HOM05D004912 ORTHO05D006144 8.9e-09 64.7 190 26.3
Rhsim11G0053200 Rhododendron simsii HOM05D004912 ORTHO05D006144 1.2e-08 64.3 260 25.0
DCAR_024339 Daucus carota HOM05D004912 ORTHO05D006144 1.5e-08 63.9 193 23.8
ECA247G4121 Erigeron canadensis HOM05D004912 ORTHO05D006144 1.5e-08 63.9 90 34.4
Migut.N03366 Erythranthe guttata HOM05D004912 ORTHO05D006144 4.4e-08 62.4 196 29.6
TPR.G312 Trifolium pratense HOM05D004912 ORTHO05D006144 4.4e-08 62.4 89 39.3
THA.LOC104800129 Tarenaya hassleriana HOM05D004912 ORTHO05D006144 1.3e-07 60.8 192 27.1
Lsat_1_v5_gn_5_118600 Lactuca sativa HOM05D004912 ORTHO05D006144 2.2e-07 60.1 195 27.7
SMO118G0438 Selaginella moellendorffii HOM05D004395 ORTHO05D005234 2.2e-07 60.1 189 28.0
Hma1.2p1_0009F.1_g005990 Hydrangea macrophylla HOM05D004912 ORTHO05D006144 3.7e-07 59.3 89 36.0
Sc01g0001930 Simmondsia chinensis HOM05D004912 ORTHO05D006144 4.9e-07 58.9 86 40.7
GSVIVG01001776001 Vitis vinifera HOM05D004912 ORTHO05D006144 3.2e-06 56.2 76 40.8
BcaB03g14195 Brassica carinata HOM05D004912 ORTHO05D006144 4.1e-06 55.8 200 28.0
Rhsim12G0007100 Rhododendron simsii HOM05D004912 ORTHO05D006144 7.0e-06 55.1 85 37.6


User provided reference genes

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