Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2887 Punica granatum HOM05D006632 ORTHO05D008224 1.9e-133 479.2 243 100.0
CSS0044555 Camellia sinensis var. sinensis HOM05D006632 ORTHO05D008224 7.3e-93 344.4 235 73.2
Eucgr.E00435 Eucalyptus grandis HOM05D006632 ORTHO05D008224 1.3e-92 343.6 242 74.0
Cc08_g12700 Coffea canephora HOM05D006632 ORTHO05D008224 1.5e-90 336.7 234 72.2
Oeu062975.1 Olea europaea HOM05D006632 ORTHO05D008224 3.4e-90 335.5 232 72.8
GSVIVG01001305001 Vitis vinifera HOM05D006632 ORTHO05D008224 3.4e-90 335.5 237 70.9
Actinidia05199 Actinidia chinensis HOM05D006632 ORTHO05D008224 7.1e-88 327.8 231 71.9
MSTRG.25531 Avicennia marina HOM05D006632 ORTHO05D008224 7.1e-88 327.8 233 70.0
Rhsim07G0107100 Rhododendron simsii HOM05D006632 ORTHO05D008224 1.6e-87 326.6 231 70.6
Nn6g34002 Nelumbo nucifera HOM05D006632 ORTHO05D008224 2.1e-87 326.2 235 70.2
CiPaw.11G152400 Carya illinoinensis HOM05D006632 ORTHO05D008224 3.5e-87 325.5 233 69.5
Hma1.2p1_0916F.1_g236520 Hydrangea macrophylla HOM05D006632 ORTHO05D008224 3.5e-87 325.5 231 70.1
TWI81G0482 Tripterygium wilfordii HOM05D006632 ORTHO05D008224 3.5e-87 325.5 235 71.9
Manes.01G079200 Manihot esculenta HOM05D006632 ORTHO05D008224 4.6e-87 325.1 236 72.0
Lj2A215T22 Lonicera japonica HOM05D006632 ORTHO05D008224 1.8e-86 323.2 233 67.8
Sopen08g003360 Solanum pennellii HOM05D006632 ORTHO05D008224 1.8e-86 323.2 233 70.0
CARHR222910 Cardamine hirsuta HOM05D006632 ORTHO05D008224 2.3e-86 322.8 231 70.6
Thecc.03G254100 Theobroma cacao HOM05D006632 ORTHO05D008224 2.3e-86 322.8 234 70.5
PGSC0003DMG400012506 Solanum tuberosum HOM05D006632 ORTHO05D008224 3.9e-86 322.0 233 69.1
Atru.chr9.1340 Acer truncatum HOM05D006632 ORTHO05D008224 5.1e-86 321.6 231 70.6
Solyc08g007410.4 Solanum lycopersicum HOM05D006632 ORTHO05D008224 8.7e-86 320.9 234 68.8
Gohir.A12G219900 Gossypium hirsutum HOM05D006632 ORTHO05D008224 1.1e-85 320.5 231 71.4
Gohir.D12G222100 Gossypium hirsutum HOM05D006632 ORTHO05D008224 1.1e-85 320.5 231 71.9
Potri.003G111100 Populus trichocarpa HOM05D006632 ORTHO05D008224 1.1e-85 320.5 230 71.3
Migut.A00961 Erythranthe guttata HOM05D006632 ORTHO05D008224 1.5e-85 320.1 239 68.2
Cfa012746 Carpinus fangiana HOM05D006632 ORTHO05D008224 2.5e-85 319.3 232 70.3
Gorai.008G238100 Gossypium raimondii HOM05D006632 ORTHO05D008224 4.3e-85 318.5 231 71.4
Potri.008G135980 Populus trichocarpa HOM05D006632 ORTHO05D008224 5.6e-85 318.2 230 70.4
CANSAT21G1011 Cannabis sativa HOM05D006632 ORTHO05D008224 9.6e-85 317.4 234 69.2
Carub.0007s2499 Capsella rubella HOM05D006632 ORTHO05D008224 9.6e-85 317.4 231 68.0
Lsat_1_v5_gn_6_91561 Lactuca sativa HOM05D006632 ORTHO05D008224 9.6e-85 317.4 233 68.2
Aa31LG2G12620 Aethionema arabicum HOM05D006632 ORTHO05D008224 2.1e-84 316.2 231 69.3
Nitab4.5_0001707g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 2.1e-84 316.2 243 67.5
AL7G38450 Arabidopsis lyrata HOM05D006632 ORTHO05D008224 2.8e-84 315.8 231 68.8
Ciclev10022042m.g Citrus clementina HOM05D006632 ORTHO05D008224 3.7e-84 315.5 234 69.7
AT4G16510 Arabidopsis thaliana HOM05D006632 ORTHO05D008224 8.1e-84 314.3 231 68.0
Prupe.5G072600 Prunus persica HOM05D006632 ORTHO05D008224 1.4e-83 313.5 233 67.4
Nitab4.5_0000312g0210 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.8e-83 313.2 234 67.5
Nitab4.5_0004059g0060 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.8e-83 313.2 236 67.4
Haze_07882 Corylus avellana HOM05D006632 ORTHO05D008224 2.4e-83 312.8 230 69.1
Thhalv10026162m.g Eutrema salsugineum HOM05D006632 ORTHO05D008224 2.4e-83 312.8 231 67.5
DCAR_027784 Daucus carota HOM05D006632 ORTHO05D008224 3.1e-83 312.4 237 68.8
Glyma.05G058200 Glycine max HOM05D006632 ORTHO05D008224 3.1e-83 312.4 233 68.7
Duzib205G0315 Durio zibethinus HOM05D006632 ORTHO05D008224 4.0e-83 312.0 231 69.3
VMungo0251G2371 Vigna mungo HOM05D006632 ORTHO05D008224 4.0e-83 312.0 233 68.2
MELO3C013948.2 Cucumis melo HOM05D006632 ORTHO05D008224 5.3e-83 311.6 236 66.1
A08p12540 Brassica napus HOM05D006632 ORTHO05D008224 9.0e-83 310.8 231 67.5
BraA08t33245Z Brassica rapa HOM05D006632 ORTHO05D008224 9.0e-83 310.8 231 67.5
Sp7g15070 Schrenkiella parvula HOM05D006632 ORTHO05D008224 9.0e-83 310.8 229 67.7
PSO063G6697 Papaver somniferum HOM05D006632 ORTHO05D008224 1.2e-82 310.5 231 64.1
RcHm_v2.0_Chr7g0202881 Rosa chinensis HOM05D006632 ORTHO05D008224 2.6e-82 309.3 235 68.1
BolC8t48376H Brassica oleracea HOM05D006632 ORTHO05D008224 5.8e-82 308.1 231 66.7
vmacro14091 Vaccinium macrocarpon HOM05D006632 ORTHO05D008224 5.8e-82 308.1 276 59.1
ClCG10G002780 Citrullus lanatus HOM05D006632 ORTHO05D008224 7.6e-82 307.8 236 64.8
arahy.Tifrunner.gnm1.ann1.UQJ0AM Arachis hypogaea HOM05D006632 ORTHO05D008224 1.3e-81 307.0 233 67.8
arahy.Tifrunner.gnm1.ann1.E5X9TE Arachis hypogaea HOM05D006632 ORTHO05D008224 1.7e-81 306.6 233 67.8
FAN18G2132 Fragaria x ananassa HOM05D006632 ORTHO05D008224 2.2e-81 306.2 233 67.4
PSO782G3692 Papaver somniferum HOM05D006632 ORTHO05D008224 2.2e-81 306.2 231 63.2
Phvul.003G219500 Phaseolus vulgaris HOM05D006632 ORTHO05D008224 8.4e-81 304.3 233 66.5
HPP92_014478 Vanilla planifolia HOM05D006632 ORTHO05D008224 8.4e-81 304.3 239 64.0
Lj4g0001078 Lotus japonicus HOM05D006632 ORTHO05D008224 1.4e-80 303.5 233 65.2
Rhsim07G0106500 Rhododendron simsii HOM05D006632 ORTHO05D008224 1.4e-80 303.5 298 55.4
Sed0019633 Sechium edule HOM05D006632 ORTHO05D008224 1.4e-80 303.5 236 65.3
ECA240G2825 Erigeron canadensis HOM05D006632 ORTHO05D008224 1.2e-79 300.4 232 63.8
Lalb_Chr05g0225741 Lupinus albus HOM05D006632 ORTHO05D008224 1.6e-79 300.1 233 66.1
AUR62039953 Chenopodium quinoa HOM05D006632 ORTHO05D008224 2.1e-79 299.7 227 70.5
AUR62007500 Chenopodium quinoa HOM05D006632 ORTHO05D008224 3.5e-79 298.9 228 68.9
TPR.G37669 Trifolium pratense HOM05D006632 ORTHO05D008224 1.0e-78 297.4 233 66.5
Ah.12g056690 Amaranthus hybridus HOM05D006632 ORTHO05D008224 1.3e-78 297.0 231 66.2
Psat4g070160 Pisum sativum HOM05D006632 ORTHO05D008224 8.7e-78 294.3 234 65.4
Sabra03G0077000 Salix brachista HOM05D006632 ORTHO05D008224 8.7e-78 294.3 271 59.8
HanXRQChr03g0088651 Helianthus annuus HOM05D006632 ORTHO05D008224 2.5e-77 292.7 227 65.6
THA.LOC104814709 Tarenaya hassleriana HOM05D006632 ORTHO05D008224 3.3e-77 292.4 242 64.0
EL10Ac5g13049 Beta vulgaris HOM05D006632 ORTHO05D008224 5.6e-77 291.6 230 66.5
Aqoxy5G03914 Aquilegia oxysepala HOM05D006632 ORTHO05D008224 7.4e-77 291.2 234 63.2
CAN.G1227.10 Capsicum annuum HOM05D006632 ORTHO05D008224 7.4e-77 291.2 176 77.3
CDE02G1947 Ceratophyllum demersum HOM05D006632 ORTHO05D008224 7.4e-77 291.2 209 68.4
FAN04G0341 Fragaria x ananassa HOM05D006632 ORTHO05D008224 7.4e-77 291.2 240 64.2
Os02g0662200 Oryza sativa ssp. japonica HOM05D006632 ORTHO05D008224 7.4e-77 291.2 231 64.1
FAN08G0873 Fragaria x ananassa HOM05D006632 ORTHO05D008224 9.6e-77 290.8 240 63.8
MD06G1061300 Malus domestica HOM05D006632 ORTHO05D008224 2.8e-76 289.3 232 63.8
Medtr4g101100 Medicago truncatula HOM05D006632 ORTHO05D008224 3.7e-76 288.9 233 64.4
CsaV3_3G002820 Cucumis sativus L. HOM05D006632 ORTHO05D008224 4.8e-76 288.5 235 61.3
FAN13G0450 Fragaria x ananassa HOM05D006632 ORTHO05D008224 8.2e-76 287.7 258 60.5
Zm00001eb249830 Zea mays HOM05D006632 ORTHO05D008224 9.0e-75 284.3 231 63.2
SGA_v2.0_scaffold120G32870 Striga asiatica HOM05D006632 ORTHO05D008224 2.9e-73 279.3 298 53.0
unitig_27.g25096 Utricularia gibba HOM05D006632 ORTHO05D008224 2.9e-73 279.3 206 65.5
Dinv21617 Davidia involucrata HOM05D006632 ORTHO05D008224 1.4e-72 276.9 233 62.7
SEGI_31519 Sequoiadendron giganteum HOM05D006632 ORTHO05D008224 2.1e-71 273.1 236 60.2
SMO143G0241 Selaginella moellendorffii HOM05D006632 ORTHO05D008224 1.8e-70 270.0 208 61.1
Mapoly0121s0036 Marchantia polymorpha HOM05D006632 ORTHO05D008224 3.9e-70 268.9 182 70.3
BcaC07g37993 Brassica carinata HOM05D006632 ORTHO05D008224 6.7e-70 268.1 205 66.8
Pp3c24_4050 Physcomitrium patens HOM05D006632 ORTHO05D008224 9.7e-69 264.2 246 55.3
Sc01g0008570 Simmondsia chinensis HOM05D006632 ORTHO05D008224 1.6e-68 263.5 160 76.9
QL12p012693 Quercus lobata HOM05D006632 ORTHO05D008224 9.4e-64 247.7 188 67.6
Hund14588 Selenicereus undatus HOM05D006632 ORTHO05D008224 2.7e-63 246.1 386 42.5
Peaxi162Scf00102g01151 Petunia axillaris HOM05D006632 ORTHO05D008224 7.9e-63 244.6 232 57.8
MD00G1115100 Malus domestica HOM05D006632 ORTHO05D008224 8.8e-62 241.1 246 54.5
Nitab4.5_0017825g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.2e-58 230.7 195 62.6
CBR_g26463 Chara braunii HOM05D006632 ORTHO05D008224 5.9e-58 228.4 185 61.6
DCAR_004945 Daucus carota HOM05D006632 ORTHO05D008224 2.1e-55 219.9 232 51.7
Cre07.g338250 Chlamydomonas reinhardtii HOM05D006632 ORTHO05D008224 8.5e-49 198.0 204 50.0
SalBow6G7145 Salvia bowleyana HOM05D006632 ORTHO05D008224 8.0e-47 191.4 162 64.2
Ca_21955_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 7.2e-40 168.3 158 58.9
Ca_22220_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 1.2e-39 167.5 180 52.8
ATR0564G418 Amborella trichopoda HOM05D006632 ORTHO05D008224 1.6e-39 167.2 205 48.8
C01p26240 Brassica napus HOM05D006632 ORTHO05D008224 1.4e-38 164.1 140 62.1
BolC1t02568H Brassica oleracea HOM05D006632 ORTHO05D008224 1.4e-38 164.1 140 62.1
Dinv39125 Davidia involucrata HOM05D006632 ORTHO05D008224 7.5e-37 158.3 148 60.8
PRCOL_00001140 Prasinoderma coloniale HOM05D006632 ORTHO05D008224 4.8e-36 155.6 227 41.0
MCO15G182 Micromonas commoda HOM05D006632 ORTHO05D008224 1.2e-34 151.0 227 40.5
BraA01t02010Z Brassica rapa HOM05D006632 ORTHO05D008224 3.1e-27 126.3 149 50.3
A01p20910 Brassica napus HOM05D006632 ORTHO05D008224 7.7e-26 121.7 149 49.0
AagrBONN_evm.TU.Sc2ySwM_117.1014 Anthoceros agrestis HOM05D006632 ORTHO05D008224 8.6e-25 118.2 176 42.6
Cpa.g.sc276.6 Carica papaya HOM05D006632 ORTHO05D008224 1.2e-21 107.8 104 63.5
TAR636G0287 Trochodendron aralioides HOM05D006632 ORTHO05D008224 8.3e-20 101.7 105 56.2
Peaxi162Scf00002g00156 Petunia axillaris HOM05D006632 ORTHO05D008224 2.4e-19 100.1 80 62.5
Duzib068G0053 Durio zibethinus HOM05D006632 ORTHO05D008224 4.5e-18 95.9 54 79.6
FvH4_5g00080 Fragaria vesca HOM05D011292 ORTHO05D013599 6.6e-17 92.0 111 52.3
DCAR_004944 Daucus carota HOM05D006632 ORTHO05D008224 6.4e-12 75.5 103 47.6
Potri.001G122501 Populus trichocarpa HOM05D006632 ORTHO05D008224 4.1e-11 72.8 85 48.2
Sabra01G0094400 Salix brachista HOM05D006632 ORTHO05D008224 7.8e-10 68.6 45 68.9


User provided reference genes

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