Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 3.4e-121 438.3 224 100.0
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 7.7e-89 330.9 215 75.3
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.0e-88 330.5 210 77.1
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.3e-88 330.1 210 77.1
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 2.9e-88 328.9 210 77.6
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 8.6e-88 327.4 210 77.1
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.1e-87 327.0 218 73.9
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 7.3e-87 324.3 214 74.8
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 9.5e-87 323.9 220 73.6
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 1.2e-86 323.6 225 72.0
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 2.1e-86 322.8 225 72.4
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.7e-86 321.6 218 75.7
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.4e-85 320.1 218 75.7
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.8e-85 319.7 224 72.3
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 2.3e-85 319.3 225 71.6
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 4.0e-85 318.5 214 73.8
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.0e-85 318.5 218 76.1
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 2.6e-84 315.8 209 75.1
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 3.4e-84 315.5 216 71.3
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 3.4e-84 315.5 213 75.1
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 5.7e-84 314.7 225 69.8
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 7.5e-84 314.3 223 71.3
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.3e-83 313.5 213 74.2
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.3e-83 313.5 209 75.1
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 1.3e-83 313.5 220 71.8
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.7e-83 313.2 210 71.9
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.2e-83 312.8 216 73.6
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.9e-83 312.4 214 73.4
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.9e-83 312.4 219 68.5
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 3.7e-83 312.0 214 72.0
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 3.7e-83 312.0 223 71.3
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.7e-83 312.0 216 70.4
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 6.4e-83 311.2 223 71.3
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 8.3e-83 310.8 216 71.3
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.1e-82 310.5 217 72.4
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.1e-82 310.5 224 71.4
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 1.4e-82 310.1 209 72.7
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 1.4e-82 310.1 210 72.9
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.8e-82 309.7 208 73.1
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.8e-82 309.7 216 74.5
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.8e-82 309.7 213 73.7
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 2.4e-82 309.3 214 71.5
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 3.2e-82 308.9 210 71.4
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 3.2e-82 308.9 210 71.9
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 3.2e-82 308.9 224 68.8
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 4.1e-82 308.5 232 68.1
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 9.2e-82 307.4 215 71.2
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.6e-81 306.6 210 73.8
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 2.0e-81 306.2 218 70.6
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 2.7e-81 305.8 216 69.4
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 2.7e-81 305.8 230 67.8
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 3.5e-81 305.4 214 71.0
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 3.5e-81 305.4 212 71.2
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 4.6e-81 305.1 214 70.6
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 5.9e-81 304.7 216 69.0
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 5.9e-81 304.7 209 71.3
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 5.9e-81 304.7 214 70.1
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 7.8e-81 304.3 205 72.7
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.0e-80 303.9 223 70.4
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.0e-80 303.9 226 69.5
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.0e-80 303.9 230 68.7
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 1.0e-80 303.9 205 73.7
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.0e-80 303.9 224 67.9
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-80 303.5 214 71.0
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-80 303.5 231 69.3
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.7e-80 303.1 202 73.3
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.7e-80 303.1 231 68.8
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.7e-80 303.1 231 69.3
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 2.3e-80 302.8 224 71.0
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 3.0e-80 302.4 216 70.8
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 3.9e-80 302.0 241 66.4
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 5.0e-80 301.6 210 70.0
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 5.0e-80 301.6 210 70.0
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 8.6e-80 300.8 266 60.9
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.1e-79 300.4 214 69.6
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 1.1e-79 300.4 220 72.3
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.5e-79 300.1 212 71.7
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 1.9e-79 299.7 221 71.0
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 2.5e-79 299.3 214 68.7
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 3.3e-79 298.9 220 71.8
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 4.3e-79 298.5 210 73.8
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 5.6e-79 298.1 221 68.3
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 7.3e-79 297.7 224 67.0
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.2e-78 297.0 222 69.4
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.2e-78 297.0 216 72.2
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.6e-78 296.6 227 68.7
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.6e-78 296.6 214 69.6
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.1e-78 296.2 206 72.8
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.1e-78 296.2 206 72.8
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 6.2e-78 294.7 232 65.9
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.0e-77 293.9 224 65.2
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 1.0e-77 293.9 216 68.1
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.8e-77 293.1 223 68.2
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 2.3e-77 292.7 222 69.4
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 2.3e-77 292.7 218 68.3
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 2.3e-77 292.7 222 68.5
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 3.1e-77 292.4 218 67.9
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.0e-77 292.0 222 68.5
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 6.8e-77 291.2 224 64.7
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 1.5e-76 290.0 209 70.8
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 4.4e-76 288.5 214 70.1
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 5.8e-76 288.1 224 67.0
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 2.9e-75 285.8 212 69.8
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.9e-75 285.8 222 66.2
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.4e-74 283.5 232 63.8
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.4e-74 283.5 224 67.0
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 1.4e-74 283.5 239 62.3
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-73 280.4 222 65.8
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.6e-73 280.0 227 63.4
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 7.8e-73 277.7 215 68.4
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.3e-72 276.2 214 66.8
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.6e-70 270.0 216 62.0
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 3.6e-70 268.9 214 65.9
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 6.2e-70 268.1 214 65.9
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 6.2e-70 268.1 211 62.6
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.4e-69 266.9 213 64.8
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.8e-69 266.5 305 49.8
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 3.1e-69 265.8 215 62.3
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.5e-68 263.5 170 75.3
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 2.4e-66 256.1 170 75.9
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 3.2e-66 255.8 218 62.4
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.5e-65 252.3 220 60.5
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.0e-64 250.8 165 75.8
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.5e-63 246.9 231 61.0
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 2.3e-61 239.6 212 62.7
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 2.2e-59 233.0 217 54.4
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 3.2e-58 229.2 216 57.9
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 7.1e-58 228.0 176 68.2
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.2e-57 227.3 223 54.3
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 1.7e-56 223.4 177 60.5
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 2.3e-56 223.0 209 57.9
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 7.3e-55 218.0 206 57.8
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 9.6e-55 217.6 211 53.1
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.1e-54 216.5 128 82.8
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 4.4e-52 208.8 145 71.7
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 5.8e-52 208.4 120 81.7
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 9.9e-52 207.6 158 67.7
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 3.2e-50 202.6 146 71.2
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 5.4e-50 201.8 242 44.2
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 7.1e-50 201.4 174 62.6
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.6e-49 198.7 117 78.6
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.1e-45 187.6 120 75.0
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 6.9e-45 184.9 104 81.7
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 9.9e-44 181.0 207 49.3
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 7.9e-41 171.4 142 61.3
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.3e-38 164.1 220 44.5
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 3.4e-36 156.0 187 46.0
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 5.8e-36 155.2 302 36.1
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 9.9e-36 154.5 190 48.9
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 7.9e-33 144.8 179 48.0
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.3e-27 127.5 81 75.3
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.2e-26 122.9 128 54.7
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 5.1e-24 115.5 75 76.0
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 4.8e-22 109.0 160 43.1
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.1e-21 107.8 80 68.8
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.4e-21 106.7 168 40.5
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 2.4e-21 106.7 95 56.8
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.5e-20 104.0 83 62.7
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.5e-20 104.0 59 81.4
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 7.6e-20 101.7 114 50.9
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.3e-19 100.9 196 37.8
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 1.7e-19 100.5 83 60.2
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 5.0e-19 99.0 81 61.7
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 1.1e-18 97.8 67 73.1
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 4.6e-17 92.4 169 36.7
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 2.2e-14 83.6 140 35.7
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 8.2e-14 81.6 106 49.1
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 8.2e-14 81.6 99 46.5
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 8.5e-11 71.6 74 56.8
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.1e-10 71.2 61 55.7
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 2.1e-09 67.0 46 67.4
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 7.4e-07 58.5 52 59.6
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 9.7e-07 58.2 41 63.4
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 1.7e-06 57.4 31 80.6
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.2e-06 57.0 34 64.7


User provided reference genes

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