Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 1.4e-301 1038.9 525 100.0
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.1e-100 370.5 531 44.1
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.3e-99 367.1 473 46.9
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-98 364.8 536 43.5
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 3.6e-97 359.8 598 40.8
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 3.4e-95 353.2 557 41.7
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 1.3e-94 351.3 475 45.7
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 1.9e-90 337.4 459 44.0
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 7.4e-90 335.5 658 36.6
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 3.7e-89 333.2 570 40.9
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 8.4e-86 322.0 530 41.5
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 2.5e-85 320.5 369 48.8
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.2e-85 320.1 468 42.9
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 7.1e-85 318.9 577 39.5
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 1.6e-84 317.8 371 48.8
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 4.6e-84 316.2 360 49.4
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 7.9e-84 315.5 424 44.6
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 2.3e-83 313.9 358 50.8
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 3.0e-83 313.5 517 39.7
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 5.1e-83 312.8 424 44.3
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 1.1e-82 311.6 425 44.9
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 1.1e-82 311.6 361 47.6
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 4.3e-82 309.7 390 44.9
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 9.6e-82 308.5 446 41.7
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 2.4e-80 303.9 412 44.9
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 1.3e-78 298.1 524 39.9
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 7.2e-77 292.4 589 37.4
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 7.2e-77 292.4 583 36.7
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 1.1e-74 285.0 568 38.7
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 2.8e-73 280.4 357 47.1
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 5.3e-72 276.2 604 34.9
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 5.3e-72 276.2 396 40.4
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 1.0e-70 271.9 590 34.6
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 1.4e-69 268.1 379 40.9
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-69 268.1 642 34.3
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 1.4e-69 268.1 440 40.2
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 4.2e-69 266.5 588 33.5
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 1.2e-68 265.0 468 38.0
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 4.6e-68 263.1 357 42.0
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 4.6e-68 263.1 457 38.1
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 6.1e-68 262.7 449 38.5
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 5.1e-67 259.6 451 37.9
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 8.8e-67 258.8 471 36.1
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 9.7e-66 255.4 449 37.6
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 2.8e-65 253.8 437 38.9
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 4.8e-65 253.1 351 43.6
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 6.3e-65 252.7 517 35.8
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 8.2e-65 252.3 391 40.2
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 9.1e-64 248.8 402 39.6
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 6.5e-62 242.7 435 37.2
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 1.9e-61 241.1 475 36.8
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.7e-60 237.3 294 46.6
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 2.0e-58 231.1 525 35.0
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 3.3e-58 230.3 399 37.8
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 9.1e-56 222.2 433 36.7
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 2.0e-55 221.1 387 35.7
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 1.3e-54 218.4 561 33.7
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 6.5e-54 216.1 397 36.3
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 5.2e-51 206.5 418 37.8
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 1.6e-47 194.9 278 42.1
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 2.0e-47 194.5 295 40.7
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.0e-46 189.9 328 36.6
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 1.1e-45 188.7 267 45.3
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 5.5e-45 186.4 276 40.6
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 1.6e-44 184.9 266 42.1
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 8.0e-44 182.6 279 39.4
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.8e-43 179.1 194 50.5
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 1.5e-42 178.3 432 33.6
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 2.0e-42 177.9 327 35.5
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.3e-41 175.3 232 43.1
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 2.8e-41 174.1 231 42.9
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.7e-39 167.5 249 41.0
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 5.9e-39 166.4 175 52.0
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 3.8e-38 163.7 275 38.9
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 1.1e-37 162.2 177 49.2
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 2.6e-34 151.0 179 50.3
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 1.4e-32 145.2 255 37.3
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 2.4e-32 144.4 243 37.4
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.1e-32 144.1 146 53.4
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 2.0e-31 141.4 238 36.6
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 2.7e-31 141.0 498 27.3
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 3.5e-31 140.6 271 34.7
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 5.9e-31 139.8 122 59.8
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.5e-29 134.4 112 58.9
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 9.5e-29 132.5 224 36.6
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 6.8e-27 126.3 154 48.1
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.4e-26 123.6 152 47.4
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.4e-26 123.6 152 47.4
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.7e-25 121.7 152 47.4
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.9e-25 120.2 152 46.7
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 8.3e-25 119.4 94 62.8
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-24 119.0 80 70.0
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-24 119.0 80 70.0
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.1e-24 117.1 71 76.1
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 7.0e-24 116.3 162 43.2
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 2.7e-23 114.4 162 41.4
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 3.5e-23 114.0 239 35.1
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 1.3e-22 112.1 143 46.9
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 1.7e-22 111.7 162 42.0
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 3.0e-22 110.9 161 42.2
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 6.6e-22 109.8 150 44.0
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 8.6e-22 109.4 161 42.2
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.6e-21 106.7 89 57.3
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 5.6e-21 106.7 237 35.4
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.2e-20 105.5 70 67.1
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 1.6e-20 105.1 140 45.7
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 2.8e-20 104.4 154 41.6
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 3.6e-20 104.0 112 50.0
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 3.6e-20 104.0 139 44.6
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 8.0e-20 102.8 148 43.2
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 1.8e-19 101.7 140 45.0
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 2.3e-19 101.3 127 45.7
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 3.4e-18 97.4 144 44.4
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 4.9e-17 93.6 398 27.1
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 8.3e-17 92.8 157 40.1
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.2e-16 89.4 73 64.4
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 1.3e-14 85.5 194 36.1
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-11 75.9 88 48.9
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 1.4e-11 75.5 103 46.6
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 6.4e-09 66.6 87 41.4
FAN18G0036 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.1e-08 63.9 35 80.0
Eucgr.E00945 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.2e-08 62.8 80 41.2
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 9.2e-08 62.8 44 65.9
Eucgr.E00704 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.6e-07 62.0 74 41.9
Eucgr.H03760 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.6e-07 62.0 60 60.0
PSO063G6181 Papaver somniferum HOM05D005777 ORTHO05D006854 1.7e-06 58.5 47 61.7


User provided reference genes

Program Settings