Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 7.9e-52 206.8 105 100.0
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 6.5e-22 107.5 99 58.6
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.5e-21 105.5 99 58.6
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.1e-20 102.4 99 53.5
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.1e-20 102.4 99 57.6
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.1e-20 102.4 91 58.2
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.8e-19 99.4 99 56.6
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.0e-19 98.2 109 54.1
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.0e-19 98.2 90 56.7
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 1.2e-18 96.7 92 58.7
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.5e-18 96.3 92 56.5
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 3.4e-18 95.1 96 54.2
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 4.4e-18 94.7 99 49.5
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.4e-18 94.7 91 54.9
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.8e-18 93.6 91 53.8
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.7e-17 92.8 97 49.5
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 2.2e-17 92.4 99 50.5
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 2.8e-17 92.0 91 54.9
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 6.3e-17 90.9 99 50.5
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 1.1e-16 90.1 102 48.0
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.4e-16 89.7 99 49.5
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.4e-16 89.0 91 53.8
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.1e-16 88.6 93 52.7
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.1e-16 88.6 93 52.7
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 3.1e-16 88.6 99 50.5
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 4.1e-16 88.2 90 54.4
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 5.4e-16 87.8 92 53.3
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 7.0e-16 87.4 91 52.7
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.2e-15 86.7 99 49.5
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.2e-15 86.7 90 53.3
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.6e-15 86.3 89 49.4
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 2.0e-15 85.9 99 47.5
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 2.7e-15 85.5 95 48.4
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 2.7e-15 85.5 99 49.5
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 3.5e-15 85.1 99 47.5
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.5e-15 85.1 90 53.3
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.5e-15 85.1 92 50.0
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 4.5e-15 84.7 99 46.5
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.5e-15 84.7 97 46.4
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 4.5e-15 84.7 90 53.3
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 4.5e-15 84.7 90 53.3
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 5.9e-15 84.3 102 44.1
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 5.9e-15 84.3 92 50.0
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 7.7e-15 84.0 99 48.5
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.0e-14 83.6 84 53.6
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.0e-14 83.6 92 50.0
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.0e-14 83.6 92 50.0
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.3e-14 83.2 94 48.9
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.7e-14 82.8 99 45.5
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.2e-14 82.4 90 53.3
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 2.9e-14 82.0 91 49.5
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 2.9e-14 82.0 91 49.5
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 3.8e-14 81.6 99 45.5
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 5.0e-14 81.3 89 46.1
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 5.0e-14 81.3 99 45.5
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.0e-14 81.3 92 46.7
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.0e-14 81.3 92 46.7
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 5.0e-14 81.3 93 48.4
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 6.5e-14 80.9 90 50.0
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 6.5e-14 80.9 84 53.6
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 6.5e-14 80.9 92 47.8
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 8.5e-14 80.5 95 46.3
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 1.1e-13 80.1 99 48.5
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.5e-13 79.0 90 51.1
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 3.2e-13 78.6 99 45.5
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 5.5e-13 77.8 95 46.3
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.5e-13 77.8 84 52.4
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 7.2e-13 77.4 91 45.1
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 7.2e-13 77.4 87 50.6
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 7.2e-13 77.4 91 51.6
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 9.5e-13 77.0 93 48.4
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 9.5e-13 77.0 90 48.9
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 9.5e-13 77.0 92 46.7
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 9.5e-13 77.0 86 48.8
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.6e-12 76.3 90 43.3
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.1e-12 75.9 95 44.2
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.7e-12 75.5 99 46.5
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 3.6e-12 75.1 95 45.3
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.6e-12 75.1 92 46.7
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 4.7e-12 74.7 84 52.4
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 4.7e-12 74.7 91 46.2
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.0e-12 73.9 99 46.5
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.0e-11 73.6 94 47.9
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 1.4e-11 73.2 98 44.9
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.8e-11 72.8 96 44.8
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 2.3e-11 72.4 95 47.4
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 3.0e-11 72.0 89 47.2
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 3.0e-11 72.0 78 53.8
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 4.0e-11 71.6 78 53.8
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 6.8e-11 70.9 95 43.2
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.5e-10 69.7 107 41.1
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.5e-10 69.7 96 43.8
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.5e-10 69.7 95 43.2
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 2.0e-10 69.3 91 45.1
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 2.0e-10 69.3 90 43.3
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 2.6e-10 68.9 100 44.0
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 3.4e-10 68.6 95 43.2
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 4.4e-10 68.2 90 42.2
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 9.8e-10 67.0 90 42.2
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 9.8e-10 67.0 86 46.5
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.3e-09 66.6 69 50.7
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 1.3e-09 66.6 77 46.8
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.3e-09 66.6 72 48.6
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.7e-09 66.2 83 45.8
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 1.7e-09 66.2 83 47.0
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.7e-09 66.2 87 44.8
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 1.7e-09 66.2 90 43.3
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.7e-09 66.2 100 41.0
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 2.2e-09 65.9 69 50.7
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 3.7e-09 65.1 70 48.6
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 3.7e-09 65.1 69 50.7
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 3.7e-09 65.1 69 50.7
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 3.7e-09 65.1 70 48.6
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 4.9e-09 64.7 98 40.8
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 4.9e-09 64.7 66 53.0
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 4.9e-09 64.7 69 49.3
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 4.9e-09 64.7 68 48.5
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 4.9e-09 64.7 68 48.5
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 4.9e-09 64.7 69 49.3
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 4.9e-09 64.7 68 48.5
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.1e-08 63.5 69 49.3
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 1.1e-08 63.5 91 44.0
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.4e-08 63.2 75 44.0
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 1.4e-08 63.2 69 49.3
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 1.4e-08 63.2 68 48.5
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.4e-08 63.2 97 42.3
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.4e-08 63.2 68 47.1
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.8e-08 62.8 64 53.1
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 1.8e-08 62.8 72 44.4
Aa31LG6G3890 Aethionema arabicum HOM05D005226 ORTHO05D004666 3.1e-08 62.0 82 50.0
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 3.1e-08 62.0 69 46.4
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 3.1e-08 62.0 69 46.4
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 3.1e-08 62.0 69 46.4
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 4.1e-08 61.6 69 46.4
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 4.1e-08 61.6 75 44.0
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 5.4e-08 61.2 115 35.7
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 5.4e-08 61.2 68 47.1
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 5.4e-08 61.2 66 50.0
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 7.0e-08 60.8 79 43.0
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 7.0e-08 60.8 79 43.0
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 7.0e-08 60.8 79 43.0
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 7.0e-08 60.8 68 47.1
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 2.0e-07 59.3 66 50.0
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 2.0e-07 59.3 73 45.2
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 2.7e-07 58.9 80 41.2
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 2.7e-07 58.9 78 41.0
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 3.5e-07 58.5 66 47.0
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 3.5e-07 58.5 66 47.0
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 3.5e-07 58.5 66 47.0
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 3.5e-07 58.5 66 47.0
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 4.5e-07 58.2 66 47.0
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 4.5e-07 58.2 66 47.0
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 4.5e-07 58.2 67 46.3
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 5.9e-07 57.8 66 48.5
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 5.9e-07 57.8 66 43.9
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 7.7e-07 57.4 72 44.4
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 7.7e-07 57.4 72 44.4
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.0e-06 57.0 66 48.5
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 1.3e-06 56.6 90 38.9
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.7e-06 56.2 83 41.0


User provided reference genes

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