Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 0.0e+00 1098.6 535 100.0
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 1.6e-289 998.8 535 89.0
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 4.6e-289 997.3 535 88.2
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 6.0e-289 996.9 535 88.6
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 7.8e-289 996.5 535 88.4
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 2.8e-286 988.0 535 88.4
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 6.2e-286 986.9 535 88.0
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 1.8e-285 985.3 535 88.0
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.8e-285 985.3 534 88.0
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.4e-285 984.9 537 88.3
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 3.1e-285 984.6 535 87.7
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.2e-284 982.6 535 87.9
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 7.6e-284 979.9 535 87.9
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 9.9e-284 979.5 542 87.1
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.2e-283 978.4 537 88.1
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 3.8e-283 977.6 535 87.3
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.4e-282 975.7 535 87.1
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.4e-282 974.9 535 86.9
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 3.2e-282 974.5 535 85.8
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 3.2e-282 974.5 529 87.7
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 3.2e-282 974.5 535 86.5
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 5.4e-282 973.8 535 86.2
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 7.1e-282 973.4 535 87.1
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.2e-281 972.6 540 86.3
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.6e-281 972.2 535 86.4
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.6e-281 972.2 535 86.5
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.7e-281 971.5 535 86.5
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 3.5e-281 971.1 535 86.5
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 4.6e-281 970.7 535 86.5
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.0e-280 969.5 535 86.2
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 1.0e-280 969.5 535 85.6
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 1.7e-280 968.8 535 85.6
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 6.6e-280 966.8 535 86.5
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 6.6e-280 966.8 535 86.5
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 1.5e-279 965.7 535 85.6
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.9e-279 965.3 535 85.8
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 5.6e-279 963.8 536 86.0
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 5.6e-279 963.8 535 85.4
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 3.6e-278 961.1 535 84.9
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 4.8e-278 960.7 535 85.4
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 8.1e-278 959.9 535 84.9
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 3.1e-277 958.0 536 85.4
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 4.0e-277 957.6 535 84.3
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 9.0e-277 956.4 535 84.7
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 9.0e-277 956.4 535 85.0
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 1.5e-276 955.7 535 84.9
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 7.6e-276 953.4 535 85.0
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 1.7e-275 952.2 529 86.0
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.7e-275 952.2 535 84.7
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 2.9e-275 951.4 535 84.3
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 4.9e-275 950.7 535 84.7
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 8.4e-275 949.9 535 84.7
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.4e-274 949.1 535 84.5
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.4e-274 949.1 535 84.5
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 5.5e-274 947.2 529 84.5
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 5.5e-274 947.2 534 84.8
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 7.1e-274 946.8 535 83.6
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 1.8e-272 942.2 535 84.1
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 2.3e-272 941.8 536 83.2
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 3.0e-272 941.4 535 83.4
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 6.7e-272 940.3 535 83.0
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 8.7e-272 939.9 535 83.6
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 2.5e-271 938.3 536 84.9
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 3.3e-271 937.9 537 82.9
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 4.3e-271 937.6 536 84.0
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 4.3e-271 937.6 535 83.9
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 4.3e-271 937.6 537 82.9
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 7.4e-271 936.8 537 83.1
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 4.8e-270 934.1 536 82.6
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 6.2e-270 933.7 535 82.6
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 8.1e-270 933.3 530 83.0
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 1.2e-268 929.5 536 82.6
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 2.0e-268 928.7 534 82.2
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 3.4e-268 927.9 535 82.4
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 2.2e-267 925.2 528 83.0
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 4.9e-267 924.1 531 83.2
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.1e-266 922.9 537 80.8
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 1.6e-265 919.1 535 82.2
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 3.5e-265 917.9 536 81.3
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 4.6e-265 917.5 535 80.9
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 7.9e-265 916.8 535 82.1
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 1.0e-264 916.4 535 81.1
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 1.0e-264 916.4 535 80.6
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.3e-264 916.0 535 82.1
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 6.7e-264 913.7 535 82.1
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 6.7e-264 913.7 558 79.2
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 1.1e-263 912.9 535 82.1
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.9e-263 912.1 536 81.5
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 4.3e-263 911.0 535 81.5
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 4.3e-263 911.0 558 79.0
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 5.7e-263 910.6 536 81.3
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 7.4e-263 910.2 536 81.2
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 7.4e-263 910.2 536 81.3
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 1.1e-261 906.4 535 81.3
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 1.1e-261 906.4 533 80.5
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 1.8e-261 905.6 536 81.5
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.8e-261 905.6 536 81.0
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 3.1e-261 904.8 536 81.0
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 5.3e-261 904.0 529 79.8
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 6.9e-261 903.7 533 79.9
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 2.0e-260 902.1 535 81.1
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 2.6e-260 901.7 535 80.9
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.0e-256 889.8 682 66.7
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 8.7e-256 886.7 496 86.3
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.9e-255 885.6 530 79.2
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 4.1e-253 877.9 528 77.5
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 5.9e-252 874.0 533 78.4
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.7e-251 872.5 535 79.6
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 1.7e-251 872.5 528 76.9
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 2.5e-250 868.6 494 84.4
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.5e-250 868.6 493 84.8
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 5.7e-247 857.4 666 66.5
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 6.7e-240 833.9 539 74.0
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 8.5e-235 817.0 559 70.1
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 3.2e-226 788.5 531 68.0
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 4.7e-225 784.6 525 69.5
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 1.3e-222 776.5 530 68.7
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 4.1e-221 771.5 536 72.9
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 3.5e-220 768.5 526 69.6
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.5e-215 753.1 535 65.2
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 4.3e-210 734.9 531 64.0
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 9.5e-210 733.8 441 81.6
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 1.3e-203 713.4 527 64.1
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 7.3e-202 707.6 404 81.4
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 4.1e-197 691.8 525 63.4
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 7.3e-194 681.0 497 65.6
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 1.5e-191 673.3 364 87.1
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 6.2e-185 651.4 495 67.1
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.4e-176 622.9 422 72.5
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 4.0e-168 595.5 710 50.7
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 5.7e-146 521.9 299 82.9
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.3e-134 484.2 536 50.0
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 1.5e-127 460.7 312 73.1
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 6.3e-121 438.7 537 46.2
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 3.5e-103 379.8 411 49.1
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 6.5e-102 375.6 262 70.6
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 7.3e-85 318.9 184 81.5
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 1.1e-69 268.5 148 86.5
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 4.6e-63 246.5 148 78.4
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 6.0e-47 193.0 140 65.0
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 1.7e-41 174.9 104 80.8
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.5e-40 171.0 222 43.7
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 2.7e-39 167.5 110 77.3
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 1.9e-37 161.4 95 77.9
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 1.4e-35 155.2 109 71.6
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 7.9e-23 112.8 97 63.9
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 2.4e-19 101.3 110 50.9
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 5.0e-17 93.6 46 93.5
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 1.5e-13 82.0 53 69.8
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 2.6e-13 81.3 48 87.5
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 2.2e-12 78.2 75 65.3
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 2.2e-12 78.2 42 88.1
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 2.2e-12 78.2 42 88.1
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 1.8e-11 75.1 45 77.8
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
Ca_12957_v3 Cicer arietinum L. HOM05D004282 ORTHO05D149096 7.2e-08 63.2 47 61.7
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 2.7e-07 61.2 208 25.0
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 4.7e-07 60.5 37 78.4
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 4.7e-07 60.5 37 78.4
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 8.0e-07 59.7 46 58.7
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 8.0e-07 59.7 41 68.3
PRCOL_00000049 Prasinoderma coloniale HOM05D003983 ORTHO05D004562 1.0e-06 59.3 196 26.5
Hund19014 Selenicereus undatus HOM05D003983 ORTHO05D004562 3.0e-06 57.8 207 25.1
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 3.9e-06 57.4 201 24.9
AUR62020869 Chenopodium quinoa HOM05D003983 ORTHO05D004562 8.8e-06 56.2 208 24.0


User provided reference genes

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