Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 2.0e-33 145.2 74 100.0
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 3.5e-14 81.3 79 58.2
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 4.6e-14 80.9 80 61.2
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 6.0e-14 80.5 81 59.3
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 6.7e-13 77.0 48 72.9
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.9e-12 75.5 80 55.0
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 3.3e-12 74.7 83 54.2
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 4.3e-12 74.3 66 59.1
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 9.6e-12 73.2 81 51.9
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.6e-11 72.4 83 51.8
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 1.6e-11 72.4 79 50.6
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 2.1e-11 72.0 84 50.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.1e-11 72.0 79 55.7
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 4.8e-11 70.9 68 58.8
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 4.8e-11 70.9 65 56.9
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 6.2e-11 70.5 65 60.0
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 8.1e-11 70.1 83 47.0
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 8.1e-11 70.1 68 54.4
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.1e-10 69.7 79 50.6
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.1e-10 69.7 87 52.9
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.1e-10 69.7 81 50.6
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.1e-10 69.7 79 55.7
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.1e-10 69.7 48 68.8
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.8e-10 68.9 83 50.6
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.4e-10 68.6 68 54.4
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.4e-10 68.6 68 54.4
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.4e-10 68.6 87 51.7
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.4e-10 68.6 49 69.4
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.4e-10 68.6 46 69.6
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 2.4e-10 68.6 77 54.5
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.1e-10 68.2 88 51.1
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 5.3e-10 67.4 65 55.4
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 5.3e-10 67.4 77 50.6
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 5.3e-10 67.4 76 51.3
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 5.3e-10 67.4 59 57.6
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.3e-10 67.4 48 66.7
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.3e-10 67.4 48 66.7
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.3e-10 67.4 48 66.7
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 6.9e-10 67.0 77 50.6
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 6.9e-10 67.0 74 51.4
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 6.9e-10 67.0 48 66.7
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 9.0e-10 66.6 56 55.4
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.0e-10 66.6 49 67.3
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 9.0e-10 66.6 49 67.3
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 9.0e-10 66.6 46 63.0
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.2e-09 66.2 46 69.6
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.2e-09 66.2 48 64.6
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.2e-09 66.2 48 60.4
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.5e-09 65.9 48 64.6
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.5e-09 65.9 48 64.6
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 2.0e-09 65.5 49 61.2
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 2.0e-09 65.5 77 49.4
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 2.0e-09 65.5 81 45.7
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.0e-09 65.5 48 64.6
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.6e-09 65.1 48 62.5
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 2.6e-09 65.1 49 63.3
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.4e-09 64.7 49 65.3
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 3.4e-09 64.7 48 62.5
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 4.5e-09 64.3 48 62.5
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 4.5e-09 64.3 73 52.1
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.5e-09 64.3 72 44.4
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 4.5e-09 64.3 49 63.3
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 4.5e-09 64.3 51 60.8
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 4.5e-09 64.3 61 55.7
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 5.8e-09 63.9 69 55.1
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 5.8e-09 63.9 48 62.5
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 5.8e-09 63.9 55 58.2
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 7.6e-09 63.5 48 60.4
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 7.6e-09 63.5 86 46.5
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 7.6e-09 63.5 39 69.2
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.0e-08 63.2 62 56.5
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.0e-08 63.2 60 53.3
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 1.0e-08 63.2 45 66.7
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.0e-08 63.2 74 51.4
Phvul.002G328908 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 1.0e-08 63.2 44 70.5
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.0e-08 63.2 46 60.9
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.3e-08 62.8 48 60.4
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 1.3e-08 62.8 37 75.7
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.3e-08 62.8 52 61.5
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.7e-08 62.4 60 51.7
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.7e-08 62.4 57 57.9
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.7e-08 62.4 46 63.0
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.7e-08 62.4 87 43.7
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 1.7e-08 62.4 67 52.2
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.2e-08 62.0 48 60.4
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 2.2e-08 62.0 65 55.4
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.9e-08 61.6 62 54.8
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 2.9e-08 61.6 84 48.8
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 2.9e-08 61.6 52 59.6
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 2.9e-08 61.6 64 53.1
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 3.8e-08 61.2 47 63.8
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 3.8e-08 61.2 71 56.3
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 3.8e-08 61.2 64 56.2
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 3.8e-08 61.2 64 56.2
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 4.9e-08 60.8 47 59.6
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 4.9e-08 60.8 49 59.2
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 4.9e-08 60.8 47 61.7
Gohir.A09G186001 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.9e-08 60.8 85 47.1
Gohir.D09G180500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.9e-08 60.8 85 47.1
Gorai.006G202500 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.9e-08 60.8 85 47.1
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 6.5e-08 60.5 72 43.1
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 6.5e-08 60.5 64 56.2
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 8.4e-08 60.1 60 53.3
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 8.4e-08 60.1 65 50.8
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 8.4e-08 60.1 48 62.5
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 8.4e-08 60.1 48 62.5
Gorai.007G015800 Gossypium raimondii HOM05D003086 ORTHO05D003347 8.4e-08 60.1 86 45.3
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 8.4e-08 60.1 73 46.6
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 8.4e-08 60.1 49 57.1
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 1.1e-07 59.7 64 53.1
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.1e-07 59.7 73 49.3
Gohir.D11G015350 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.1e-07 59.7 85 44.7
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.1e-07 59.7 49 57.1
Potri.003G143800 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.1e-07 59.7 63 60.3
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.1e-07 59.7 46 60.9
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.4e-07 59.3 71 47.9
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.4e-07 59.3 46 60.9
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.4e-07 59.3 42 61.9
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 1.4e-07 59.3 49 55.1
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.4e-07 59.3 50 62.0
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.4e-07 59.3 82 46.3
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 1.9e-07 58.9 48 56.2
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 1.9e-07 58.9 39 69.2
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 2.5e-07 58.5 46 60.9
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 2.5e-07 58.5 75 48.0
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 3.2e-07 58.2 74 51.4
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 3.2e-07 58.2 73 49.3
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 3.2e-07 58.2 54 57.4
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 3.2e-07 58.2 32 81.2
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 3.2e-07 58.2 78 46.2
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 3.2e-07 58.2 60 50.0
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 3.2e-07 58.2 48 58.3
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 4.2e-07 57.8 48 58.3
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 4.2e-07 57.8 47 59.6
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 4.2e-07 57.8 48 58.3
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 4.2e-07 57.8 69 50.7
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 4.2e-07 57.8 54 57.4
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 4.2e-07 57.8 64 48.4
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 4.2e-07 57.8 79 41.8
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.5e-07 57.4 49 57.1
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 5.5e-07 57.4 72 51.4
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 5.5e-07 57.4 54 57.4
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 5.5e-07 57.4 64 48.4
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 7.1e-07 57.0 56 53.6
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 7.1e-07 57.0 56 53.6
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 7.1e-07 57.0 56 53.6
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 7.1e-07 57.0 56 53.6
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 7.1e-07 57.0 56 53.6
Gohir.A11G015250 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.1e-07 57.0 76 46.1
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 7.1e-07 57.0 49 53.1
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 9.3e-07 56.6 56 51.8
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 9.3e-07 56.6 75 46.7
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 1.2e-06 56.2 64 53.1
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 1.2e-06 56.2 33 75.8
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 1.2e-06 56.2 33 75.8
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 1.2e-06 56.2 33 75.8
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 1.2e-06 56.2 33 75.8
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 1.2e-06 56.2 33 75.8
CANSAT21G1677 Cannabis sativa HOM05D003086 ORTHO05D003347 1.2e-06 56.2 42 66.7
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 1.2e-06 56.2 63 42.9
Sed0027058 Sechium edule HOM05D003086 ORTHO05D003347 1.2e-06 56.2 35 68.6
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 1.6e-06 55.8 48 54.2
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.6e-06 55.8 61 47.5
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.6e-06 55.8 38 65.8
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 1.6e-06 55.8 74 45.9
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.6e-06 55.8 74 45.9
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 2.1e-06 55.5 48 56.2
EL10Ac3g05245 Beta vulgaris HOM05D003086 ORTHO05D003347 2.7e-06 55.1 80 46.2
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 3.5e-06 54.7 59 50.8
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 4.6e-06 54.3 52 53.8
Prupe.2G191800 Prunus persica HOM05D014299 ORTHO05D017012 6.0e-06 53.9 82 41.5
AT1G64584 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 7.9e-06 53.5 50 58.0


User provided reference genes

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