Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 0.0e+00 2336.6 1180 100.0
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 1.0e-115 422.5 1289 33.0
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 1.9e-114 418.3 1340 31.3
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.1e-109 402.5 1304 31.1
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 1.4e-104 385.6 1304 30.8
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 6.1e-100 370.2 1329 29.3
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 3.0e-99 367.9 1334 29.5
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 6.7e-99 366.7 1298 30.3
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 3.3e-98 364.4 1333 31.7
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 6.3e-97 360.1 1303 31.7
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 2.0e-90 338.6 1289 29.9
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 2.8e-89 334.7 1300 29.4
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 2.6e-87 328.2 1234 29.7
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 2.6e-87 328.2 1025 30.5
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 4.5e-87 327.4 1008 30.8
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 5.5e-85 320.5 1328 27.6
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 2.1e-84 318.5 1367 28.5
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 1.4e-80 305.8 1257 28.8
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.1e-80 304.7 1277 29.8
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 7.0e-80 303.5 1292 30.3
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 1.6e-79 302.4 1291 29.8
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 5.9e-79 300.4 1263 28.2
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 5.9e-79 300.4 1338 29.1
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 1.7e-78 298.9 1047 28.7
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 6.8e-75 287.0 1351 28.2
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 4.4e-74 284.3 1347 27.0
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 6.3e-73 280.4 1180 29.7
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 3.1e-72 278.1 790 32.5
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 3.8e-70 271.2 979 29.3
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 2.8e-60 238.4 1030 28.0
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 8.0e-60 236.9 1269 26.4
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 2.3e-59 235.3 1038 27.6
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 6.4e-57 227.3 1272 27.4
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 9.2e-56 223.4 950 27.9
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 4.3e-53 214.5 1332 26.2
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 2.8e-52 211.8 1264 26.1
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 2.0e-50 205.7 1136 27.0
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 4.9e-49 201.1 971 29.1
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 3.0e-46 191.8 1222 25.3
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 7.3e-45 187.2 1241 24.8
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 6.0e-39 167.5 1269 24.1
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 2.3e-38 165.6 1328 24.0
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 1.9e-37 162.5 1279 23.8
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 1.4e-35 156.4 1283 25.1
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 4.0e-35 154.8 1298 23.0
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 4.0e-35 154.8 1399 23.4
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 2.0e-34 152.5 1282 23.7
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 2.0e-34 152.5 1350 23.9
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 9.9e-34 150.2 1262 24.1
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 3.8e-33 148.3 1237 25.2
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 2.7e-31 142.1 1234 24.3
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 1.7e-30 139.4 853 26.7
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 2.3e-30 139.0 1257 23.5
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 2.3e-30 139.0 1240 24.9
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 1.1e-29 136.7 1219 24.0
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 5.6e-29 134.4 1222 24.1
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 5.6e-29 134.4 1263 22.9
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 4.7e-28 131.3 1253 23.3
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 2.4e-27 129.0 1249 25.5
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 2.9e-25 122.1 1232 25.2
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 8.4e-25 120.6 1229 24.3
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 8.4e-25 120.6 1105 25.2
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 1.2e-23 116.7 1210 24.2
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 2.7e-23 115.5 1249 25.1
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 6.0e-23 114.4 188 42.0
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 2.3e-22 112.5 1218 24.4
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 5.1e-22 111.3 1273 23.7
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 2.5e-21 109.0 1302 23.4
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 2.1e-20 105.9 1251 23.8
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 2.1e-20 105.9 331 34.7
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 1.1e-19 103.6 151 41.7
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 1.8e-19 102.8 1156 24.0
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 1.2e-18 100.1 1216 22.6
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.2e-18 100.1 1249 21.1
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 2.0e-18 99.4 666 25.7
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 2.6e-18 99.0 1145 23.5
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 2.6e-18 99.0 150 43.3
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 6.4e-17 94.4 1257 24.3
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.1e-16 93.6 177 40.1
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 4.2e-16 91.7 1187 21.0
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 4.2e-16 91.7 865 23.2
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 1.2e-15 90.1 144 41.0
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 6.0e-15 87.8 154 37.7
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 1.3e-14 86.7 1245 23.7
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 1.3e-14 86.7 724 25.4
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 2.3e-14 85.9 149 35.6
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 6.7e-14 84.3 652 23.5
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 6.7e-14 84.3 149 37.6
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 5.6e-13 81.3 170 35.9
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.6e-12 79.7 1156 22.6
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 4.8e-12 78.2 51 66.7
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 6.2e-12 77.8 1246 23.7
AT3G58770 Arabidopsis thaliana HOM05D014107 ORTHO05D008229 3.1e-11 75.5 149 36.2
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 3.1e-11 75.5 68 51.5
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 9.0e-11 73.9 1026 22.6
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 1.2e-10 73.6 281 27.8
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 2.2e-09 69.3 477 24.3
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 6.4e-09 67.8 49 61.2
HPP92_005186 Vanilla planifolia HOM05D006994 ORTHO05D008229 1.9e-08 66.2 171 33.9
BcaC07g40225 Brassica carinata HOM05D014107 ORTHO05D008229 2.4e-08 65.9 56 51.8
Thhalv10005808m.g Eutrema salsugineum HOM05D014107 ORTHO05D008229 2.4e-08 65.9 139 34.5
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 2.4e-08 65.9 139 33.1
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 1.2e-07 63.5 144 31.2
CARHR169160 Cardamine hirsuta HOM05D014107 ORTHO05D008229 1.6e-07 63.2 154 30.5
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 3.5e-07 62.0 81 44.4
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 6.0e-07 61.2 171 29.8
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 7.9e-07 60.8 138 31.9


User provided reference genes

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