Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 4.9e-197 691.0 369 100.0
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 1.1e-140 503.8 368 73.9
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.1e-140 503.8 361 76.5
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 2.5e-140 502.7 362 74.9
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.2e-139 500.4 369 75.3
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 1.6e-139 500.0 324 80.9
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 3.9e-138 495.4 374 73.3
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 3.3e-137 492.3 372 72.6
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.6e-136 490.0 365 73.4
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 2.1e-136 489.6 373 74.0
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.1e-135 487.3 361 74.0
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.4e-135 486.9 367 73.0
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.4e-135 486.9 367 73.3
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.8e-135 486.5 362 73.8
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.8e-135 486.5 367 72.8
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.8e-135 486.5 374 71.4
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.8e-135 486.5 368 71.2
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 4.0e-135 485.3 363 73.3
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 6.9e-135 484.6 373 70.0
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.5e-134 483.4 362 73.5
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.5e-134 483.4 341 76.2
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 2.0e-134 483.0 359 73.0
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 2.6e-134 482.6 371 72.0
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 3.4e-134 482.3 327 78.9
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.0e-133 480.7 372 70.2
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.3e-133 480.3 354 73.4
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.9e-133 479.2 338 73.7
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 3.8e-133 478.8 321 78.8
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 3.8e-133 478.8 367 71.7
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 6.5e-133 478.0 324 77.8
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 8.4e-133 477.6 370 72.2
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.1e-132 477.2 382 69.9
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.1e-132 477.2 370 71.9
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.1e-132 477.2 360 73.6
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.9e-132 476.5 368 71.7
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.9e-132 476.5 361 73.4
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.5e-132 476.1 328 77.7
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 3.2e-132 475.7 374 71.1
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 3.2e-132 475.7 374 71.1
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 7.1e-132 474.6 374 70.9
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 7.1e-132 474.6 330 76.4
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 9.3e-132 474.2 358 72.3
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 2.7e-131 472.6 374 71.4
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 2.7e-131 472.6 374 71.4
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 4.6e-131 471.9 370 70.3
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 6.0e-131 471.5 369 71.8
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 7.9e-131 471.1 322 78.0
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.0e-130 470.7 336 75.3
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.0e-130 470.7 377 69.5
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.3e-130 470.3 372 70.7
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 2.3e-130 469.5 375 70.1
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 2.3e-130 469.5 374 70.1
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.3e-130 469.5 373 70.2
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 2.3e-130 469.5 374 70.1
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.3e-130 469.5 367 71.1
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 3.0e-130 469.2 374 70.3
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 3.0e-130 469.2 374 71.1
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 3.9e-130 468.8 374 70.1
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.9e-130 468.8 374 70.6
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 3.9e-130 468.8 374 70.6
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 5.1e-130 468.4 332 75.6
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 6.7e-130 468.0 357 71.1
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 8.7e-130 467.6 370 71.1
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 1.1e-129 467.2 374 70.1
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.1e-129 467.2 374 70.3
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.5e-129 466.8 348 73.3
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.9e-129 466.5 374 69.5
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.5e-129 466.1 374 69.5
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 3.3e-129 465.7 374 70.1
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.3e-129 465.3 367 70.3
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 7.4e-129 464.5 327 75.8
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 9.7e-129 464.2 375 70.1
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 2.2e-128 463.0 373 70.5
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 3.7e-128 462.2 368 70.9
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 4.8e-128 461.8 371 70.6
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 6.3e-128 461.5 327 75.2
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 6.3e-128 461.5 323 75.9
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 8.2e-128 461.1 368 70.1
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 8.2e-128 461.1 368 70.1
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 1.1e-127 460.7 369 68.3
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.4e-127 460.3 366 70.5
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.4e-127 460.3 323 75.5
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.8e-127 459.9 370 68.4
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 2.4e-127 459.5 368 68.5
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 3.1e-127 459.1 322 75.5
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 5.3e-127 458.4 367 68.1
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 5.3e-127 458.4 372 68.5
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.5e-126 456.8 361 71.2
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 3.4e-126 455.7 382 67.8
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 4.5e-126 455.3 372 68.0
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 1.0e-125 454.1 362 68.8
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.7e-125 453.4 374 63.9
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 6.5e-125 451.4 358 69.6
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 8.5e-125 451.1 371 67.4
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 8.5e-125 451.1 327 72.8
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 4.2e-124 448.7 323 74.6
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 9.4e-124 447.6 326 72.7
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 9.4e-124 447.6 373 66.5
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.2e-123 447.2 368 67.9
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 2.7e-123 446.0 368 67.7
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 4.6e-123 445.3 374 67.6
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.4e-122 443.7 370 68.1
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.5e-121 440.3 372 66.1
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.3e-121 439.1 370 68.4
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 4.3e-121 438.7 373 66.8
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 7.4e-121 438.0 366 66.9
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 9.7e-121 437.6 377 64.5
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 9.7e-121 437.6 366 66.9
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.6e-118 429.5 355 67.0
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.2e-116 422.5 305 73.1
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 2.1e-115 419.9 305 72.5
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.6e-115 419.1 305 72.5
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.7e-112 410.2 355 65.6
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 3.7e-112 409.1 356 61.8
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 9.1e-111 404.4 359 62.4
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 8.5e-109 397.9 373 58.7
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-107 394.0 318 70.8
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 2.7e-107 392.9 374 62.8
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 6.3e-104 381.7 299 71.2
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 1.4e-103 380.6 366 62.3
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 5.0e-101 372.1 339 60.8
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 2.3e-98 363.2 324 62.3
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 5.2e-98 362.1 323 61.9
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 2.9e-93 346.3 247 78.5
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 6.5e-93 345.1 325 59.7
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.1e-92 344.4 299 67.2
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 3.0e-90 336.3 364 54.7
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.5e-89 334.0 297 60.6
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 5.7e-89 332.0 243 75.7
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 1.3e-85 320.9 206 77.2
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 2.5e-84 316.6 322 55.6
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 8.9e-82 308.1 323 56.3
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 6.3e-80 302.0 327 54.1
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.8e-74 283.9 323 52.3
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.1e-71 272.7 232 60.8
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 7.3e-60 235.3 209 62.7
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.5e-54 216.5 233 52.8
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 2.3e-45 187.2 130 76.2
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 5.6e-44 182.6 165 58.8
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 2.4e-42 177.2 143 66.4
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 8.4e-40 168.7 164 57.3
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 5.4e-39 166.0 104 76.0
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 1.5e-33 147.9 95 74.7
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 7.6e-33 145.6 90 77.8
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 3.7e-27 126.7 128 55.5
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 3.1e-26 123.6 103 60.2
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 6.5e-24 115.9 78 74.4
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 3.5e-22 110.2 289 31.5
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 1.8e-21 107.8 79 62.0
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.8e-21 107.8 78 62.8
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 1.1e-20 105.1 86 59.3
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 4.8e-19 99.8 77 62.3
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.4e-18 98.2 140 42.1
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 3.4e-17 93.6 65 72.3
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.1e-15 88.6 291 32.0
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 2.3e-13 80.9 154 37.0
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 1.5e-12 78.2 285 30.5
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.3e-10 69.7 76 50.0
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.3e-10 69.7 76 50.0
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.5e-09 66.6 79 43.0
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 4.5e-09 66.6 75 50.7
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.0e-08 63.2 48 56.2
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.5e-08 62.8 43 65.1
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.1e-07 62.0 44 63.6
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 1.4e-07 61.6 59 54.2
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.5e-07 60.8 46 58.7
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.2e-06 58.5 44 61.4
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 1.6e-06 58.2 69 49.3
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.6e-06 57.0 44 56.8
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 4.6e-06 56.6 73 46.6


User provided reference genes

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