Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 2.8e-264 914.8 493 100.0
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 6.0e-211 737.6 500 81.2
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.5e-209 733.0 495 80.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 2.5e-209 732.3 504 80.4
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.1e-207 726.9 498 79.7
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 1.1e-207 726.9 505 78.4
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 3.1e-207 725.3 491 79.6
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 5.3e-207 724.5 503 79.1
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 7.6e-206 720.7 505 77.6
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.1e-204 716.8 497 78.1
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.1e-204 716.8 496 80.0
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 3.2e-204 715.3 501 78.4
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 7.2e-204 714.1 496 77.4
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 4.6e-203 711.4 497 76.9
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 6.1e-203 711.1 502 75.7
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.5e-201 706.4 494 79.1
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 9.7e-201 703.7 494 79.1
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.3e-200 703.4 502 76.1
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.7e-200 703.0 516 75.0
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 6.3e-200 701.0 468 81.0
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 8.2e-200 700.7 502 76.5
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.8e-199 699.5 505 76.6
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 4.1e-199 698.4 497 76.9
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 9.1e-199 697.2 506 76.3
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.6e-198 695.7 526 73.2
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.0e-197 693.7 497 76.5
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.3e-197 693.3 505 76.6
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.7e-197 693.0 504 76.4
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 2.9e-197 692.2 473 79.9
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.4e-196 689.9 501 75.8
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 5.5e-196 688.0 497 76.5
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 9.4e-196 687.2 494 77.3
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.4e-196 687.2 505 75.6
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.2e-195 686.8 483 76.8
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 1.2e-195 686.8 494 76.9
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.6e-195 686.4 505 74.7
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 4.7e-195 684.9 505 75.6
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.4e-194 683.3 498 76.1
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 6.7e-194 681.0 503 75.1
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.3e-193 678.7 504 75.0
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 7.4e-193 677.6 498 75.5
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.7e-192 676.4 498 75.9
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 2.2e-192 676.0 488 75.4
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.8e-192 675.6 504 74.4
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 8.2e-192 674.1 498 74.1
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.4e-191 673.3 488 75.2
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.8e-191 672.9 481 75.3
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.8e-191 672.9 485 75.1
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 2.4e-191 672.5 484 76.7
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 3.1e-191 672.2 483 74.7
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 4.5e-190 668.3 496 74.6
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 5.9e-190 667.9 496 73.8
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.0e-189 667.2 496 74.2
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.2e-189 666.0 496 74.6
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 5.0e-189 664.8 526 71.7
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 5.0e-189 664.8 498 73.3
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 8.5e-189 664.1 486 75.5
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.5e-188 662.5 479 76.6
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 7.2e-188 661.0 499 72.1
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 7.2e-188 661.0 493 74.8
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 4.7e-187 658.3 484 74.4
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.4e-186 656.8 497 72.6
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 3.0e-186 655.6 491 71.7
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 8.8e-186 654.1 480 75.6
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 4.4e-185 651.7 489 74.0
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 4.4e-185 651.7 504 73.6
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.3e-184 650.2 503 72.6
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 1.7e-184 649.8 496 72.6
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 4.8e-184 648.3 506 70.4
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.1e-183 647.1 513 69.8
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.4e-183 646.7 470 75.7
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 7.0e-183 644.4 507 70.8
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 7.0e-183 644.4 507 70.8
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 3.5e-182 642.1 511 69.9
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.3e-181 640.2 420 82.9
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 1.3e-181 640.2 508 69.9
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 5.0e-181 638.3 508 69.3
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 1.1e-180 637.1 510 69.4
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.9e-180 636.3 502 70.9
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.2e-179 633.6 513 68.2
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-179 633.6 510 69.8
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.6e-179 633.3 502 71.3
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.8e-178 629.8 484 71.3
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 4.0e-178 628.6 508 69.1
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.2e-177 627.1 498 70.9
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 4.4e-177 625.2 492 69.7
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.3e-176 623.6 487 70.0
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.7e-176 623.2 505 69.1
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.7e-176 623.2 505 69.1
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 2.2e-176 622.9 507 69.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 2.2e-176 622.9 505 72.9
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.1e-175 618.6 518 69.1
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 7.7e-174 614.4 506 68.4
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 2.2e-173 612.8 491 69.0
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 9.4e-172 607.4 442 75.6
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 6.8e-170 601.3 531 65.0
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.8e-170 600.9 486 66.7
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.3e-168 597.0 508 66.5
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.3e-168 597.0 502 66.1
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 6.3e-168 594.7 486 65.6
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.4e-167 593.6 507 66.3
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 2.4e-159 566.2 444 73.2
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 3.1e-159 565.8 380 80.0
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.5e-153 547.0 493 65.1
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.8e-153 544.3 355 81.7
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 2.7e-150 536.2 534 61.6
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 7.3e-148 528.1 480 62.9
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.6e-147 526.9 469 63.5
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 2.9e-144 516.2 477 59.1
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.7e-136 490.3 473 63.0
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 6.0e-134 481.9 506 58.5
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 4.7e-131 472.2 396 66.4
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.4e-127 460.7 443 62.1
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.2e-126 457.6 393 68.7
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.4e-119 434.1 393 61.8
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.2e-118 431.0 378 69.0
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 7.3e-116 421.8 487 56.1
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 3.4e-105 386.3 378 61.4
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 3.4e-105 386.3 378 61.4
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.5e-100 370.9 206 88.8
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.3e-91 341.3 253 78.3
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 3.7e-91 339.7 423 52.2
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 3.1e-90 336.7 377 51.7
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 5.9e-89 332.4 324 55.9
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.6e-86 324.3 355 54.4
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.8e-85 320.9 219 76.7
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.3e-80 304.7 221 73.8
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 2.2e-75 287.3 404 43.3
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.2e-65 255.0 202 72.8
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.5e-63 247.3 272 57.4
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.3e-61 240.7 359 44.0
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.2e-57 228.4 385 39.5
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-50 205.3 164 67.7
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.4e-50 204.9 346 38.2
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 4.4e-44 183.3 286 45.8
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-42 178.3 96 89.6
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 2.0e-41 174.5 133 69.9
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.7e-40 171.4 91 92.3
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.3e-39 166.8 106 70.8
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.0e-32 145.6 87 80.5
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 4.6e-25 120.2 144 52.1
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.9e-23 114.8 185 42.2
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 5.8e-20 103.2 122 50.0
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 7.8e-17 92.8 91 57.1
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 2.2e-11 74.7 71 60.6
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.9e-11 74.3 62 61.3
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.9e-11 74.3 62 61.3
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 1.9e-10 71.6 61 68.9
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.7e-09 67.8 62 56.5
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 2.3e-08 64.7 65 55.4
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.3e-08 64.7 190 33.2
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 1.9e-07 61.6 92 37.0
SEGI_40770 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 4.8e-06 57.0 50 70.0
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 8.1e-06 56.2 50 68.0


User provided reference genes

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