Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 1.0e-69 266.5 128 100.0
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 9.4e-31 137.1 137 54.7
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 2.1e-30 136.0 129 55.8
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 6.1e-30 134.4 137 55.5
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 7.9e-30 134.0 130 56.9
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 7.9e-30 134.0 135 54.1
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 1.8e-29 132.9 140 52.1
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 2.3e-29 132.5 137 54.7
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 1.5e-28 129.8 121 57.9
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 1.5e-28 129.8 130 55.4
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 4.4e-28 128.3 147 55.8
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 4.4e-28 128.3 142 53.5
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 7.4e-28 127.5 133 53.4
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 7.4e-28 127.5 116 57.8
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 9.7e-28 127.1 117 56.4
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 9.7e-28 127.1 142 53.5
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 1.7e-27 126.3 125 53.6
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 2.2e-27 125.9 147 53.1
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 2.2e-27 125.9 125 52.8
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 2.8e-27 125.6 117 56.4
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 2.8e-27 125.6 117 56.4
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 3.7e-27 125.2 132 49.2
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 3.7e-27 125.2 117 57.3
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 3.7e-27 125.2 146 52.1
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 4.8e-27 124.8 132 49.2
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 6.3e-27 124.4 133 52.6
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 8.2e-27 124.0 117 56.4
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 2.4e-26 122.5 117 57.3
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 5.3e-26 121.3 117 55.6
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 5.3e-26 121.3 117 54.7
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 1.2e-25 120.2 130 52.3
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 1.2e-25 120.2 130 51.5
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 1.5e-25 119.8 136 49.3
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 2.0e-25 119.4 121 51.2
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 2.0e-25 119.4 134 49.3
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 2.6e-25 119.0 121 51.2
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 2.6e-25 119.0 117 53.8
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 4.5e-25 118.2 117 53.8
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 1.3e-24 116.7 127 50.4
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 2.2e-24 115.9 117 55.6
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 6.5e-24 114.4 130 48.5
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 6.5e-24 114.4 132 50.0
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 8.5e-24 114.0 123 51.2
Potri.002G062950 Populus trichocarpa HOM05D007964 ORTHO05D010090 4.2e-23 111.7 135 48.1
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 5.5e-23 111.3 132 49.2
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 7.2e-23 110.9 118 51.7
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 7.2e-23 110.9 123 51.2
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 1.2e-22 110.2 124 50.0
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 2.1e-22 109.4 119 54.6
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 2.7e-22 109.0 117 51.3
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 1.1e-20 103.6 117 51.3
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 2.6e-20 102.4 105 48.6
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 9.7e-20 100.5 135 46.7
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 1.3e-19 100.1 125 47.2
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 6.3e-19 97.8 107 50.5
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 8.2e-19 97.4 108 55.6
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 1.8e-18 96.3 103 50.5
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 1.8e-18 96.3 122 46.7
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 5.3e-18 94.7 116 48.3
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 7.0e-18 94.4 95 51.6
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 9.1e-18 94.0 127 44.1
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 9.1e-18 94.0 125 45.6
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 9.1e-18 94.0 125 45.6
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 9.1e-18 94.0 143 42.7
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 1.6e-17 93.2 138 43.5
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 2.0e-17 92.8 104 49.0
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 2.6e-17 92.4 123 46.3
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 7.7e-17 90.9 112 44.6
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 1.3e-16 90.1 100 48.0
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 1.3e-16 90.1 100 48.0
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 3.2e-15 85.5 95 45.3
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 3.2e-15 85.5 97 45.4
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 2.3e-13 79.3 135 41.5
Actinidia38399 Actinidia chinensis HOM05D002803 ORTHO05D003089 3.1e-10 68.9 109 36.7
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.2e-09 67.0 45 71.1
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 2.7e-09 65.9 106 35.8
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 5.9e-09 64.7 102 38.2
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 2.2e-08 62.8 43 69.8
TAR374G0994 Trochodendron aralioides HOM05D002803 ORTHO05D003089 3.8e-08 62.0 70 45.7
TAR622G0697 Trochodendron aralioides HOM05D002803 ORTHO05D003089 3.2e-07 58.9 65 46.2
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 7.2e-07 57.8 63 42.9
Thecc.03G027600 Theobroma cacao HOM05D002803 ORTHO05D003089 7.2e-07 57.8 52 55.8
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 7.2e-07 57.8 125 32.0
PGSC0003DMG400005702 Solanum tuberosum HOM05D002803 ORTHO05D003089 1.6e-06 56.6 56 50.0
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 2.1e-06 56.2 119 30.3
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 2.1e-06 56.2 118 34.7
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 2.1e-06 56.2 63 49.2
Gohir.A11G007400 Gossypium hirsutum HOM05D002803 ORTHO05D003089 2.7e-06 55.8 55 52.7
Gohir.D11G006500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 2.7e-06 55.8 55 52.7
SMO367G0928 Selaginella moellendorffii HOM05D002803 ORTHO05D003089 3.6e-06 55.5 57 49.1
CDE07G1489 Ceratophyllum demersum HOM05D002803 ORTHO05D001341 4.7e-06 55.1 150 27.3
Lalb_Chr07g0178561 Lupinus albus HOM05D002803 ORTHO05D003089 4.7e-06 55.1 54 48.1
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 4.7e-06 55.1 131 29.0
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 4.7e-06 55.1 47 53.2
Atru.chr9.745 Acer truncatum HOM05D002803 ORTHO05D003089 6.1e-06 54.7 65 41.5
Glyma.05G013700 Glycine max HOM05D002803 ORTHO05D003089 6.1e-06 54.7 63 46.0
Gorai.007G007800 Gossypium raimondii HOM05D002803 ORTHO05D003089 6.1e-06 54.7 55 50.9
Nitab4.5_0003716g0110 Nicotiana tabacum HOM05D002803 ORTHO05D003089 6.1e-06 54.7 56 48.2
PGR044G1398 Punica granatum HOM05D002803 ORTHO05D003089 6.1e-06 54.7 87 33.3
Solyc03g119810.1 Solanum lycopersicum HOM05D002803 ORTHO05D003089 6.1e-06 54.7 56 50.0
HanXRQChr02g0042791 Helianthus annuus HOM05D002803 ORTHO05D003089 8.0e-06 54.3 37 62.2
Sabra10G0099500 Salix brachista HOM05D002803 ORTHO05D003089 8.0e-06 54.3 40 57.5
SEGI_33176 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 8.0e-06 54.3 130 29.2


User provided reference genes

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