Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 1.1e-99 366.7 187 100.0
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 3.6e-55 218.8 141 77.3
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 4.7e-55 218.4 170 67.6
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 1.4e-54 216.9 144 75.7
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 2.3e-54 216.1 185 63.2
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 3.0e-54 215.7 192 64.1
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.0e-54 215.7 178 65.7
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 1.2e-53 213.8 145 73.8
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 2.6e-53 212.6 180 66.1
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 7.5e-53 211.1 178 65.2
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 9.8e-53 210.7 153 68.6
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 9.8e-53 210.7 182 63.7
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 1.7e-52 209.9 178 64.6
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 4.8e-52 208.4 140 75.0
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 6.3e-52 208.0 172 62.8
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 6.3e-52 208.0 176 64.2
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 8.3e-52 207.6 146 70.5
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 1.1e-51 207.2 176 64.8
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 1.4e-51 206.8 177 64.4
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 1.8e-51 206.5 139 74.1
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 4.1e-51 205.3 183 62.3
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 4.1e-51 205.3 172 64.5
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 9.1e-51 204.1 139 73.4
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.2e-50 203.8 140 73.6
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 1.2e-50 203.8 150 70.0
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 3.5e-50 202.2 143 72.7
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 4.5e-50 201.8 184 62.0
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 4.5e-50 201.8 140 71.4
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.0e-49 200.7 140 70.7
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 1.3e-49 200.3 136 74.3
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.3e-49 200.3 176 62.5
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 1.7e-49 199.9 163 67.5
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 1.7e-49 199.9 145 70.3
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 2.2e-49 199.5 167 63.5
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.9e-49 199.1 147 68.7
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 2.9e-49 199.1 157 65.6
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.8e-49 198.7 145 67.6
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 8.5e-49 197.6 134 73.1
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 8.5e-49 197.6 184 60.9
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 8.5e-49 197.6 109 84.4
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 1.5e-48 196.8 141 70.2
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 2.5e-48 196.1 109 83.5
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 2.5e-48 196.1 109 83.5
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 3.2e-48 195.7 140 68.6
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 5.5e-48 194.9 170 62.4
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 7.2e-48 194.5 138 71.0
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 9.4e-48 194.1 138 71.0
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 9.4e-48 194.1 143 69.2
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 9.4e-48 194.1 156 64.1
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 1.2e-47 193.7 143 69.9
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 1.6e-47 193.4 170 61.8
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 1.6e-47 193.4 170 61.8
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 1.6e-47 193.4 169 62.7
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 1.6e-47 193.4 170 61.8
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 1.6e-47 193.4 169 62.7
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.1e-47 193.0 143 69.2
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 2.1e-47 193.0 123 75.6
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 2.7e-47 192.6 103 87.4
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 3.6e-47 192.2 171 63.7
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 3.6e-47 192.2 195 57.4
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 6.1e-47 191.4 137 72.3
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 6.1e-47 191.4 161 62.1
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 8.0e-47 191.0 150 66.7
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 1.0e-46 190.7 140 70.0
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 1.4e-46 190.3 109 81.7
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 1.4e-46 190.3 153 66.7
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 1.8e-46 189.9 134 73.1
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 2.3e-46 189.5 105 82.9
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 6.8e-46 188.0 190 58.9
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 6.8e-46 188.0 131 70.2
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 8.8e-46 187.6 144 67.4
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 1.2e-45 187.2 127 73.2
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 1.5e-45 186.8 140 67.1
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.5e-45 186.8 172 60.5
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 2.0e-45 186.4 186 57.5
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.0e-45 186.4 180 59.4
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 7.5e-45 184.5 105 79.0
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 2.8e-44 182.6 168 58.9
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 3.7e-44 182.2 152 61.2
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.1e-43 180.6 131 70.2
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 4.5e-42 175.3 101 82.2
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 7.7e-42 174.5 104 76.9
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 2.9e-41 172.6 188 57.4
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 5.6e-40 168.3 116 69.0
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.2e-39 167.2 178 53.4
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 8.0e-39 164.5 104 69.2
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 2.3e-38 162.9 101 71.3
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 4.0e-38 162.2 109 73.4
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 3.4e-37 159.1 148 60.1
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 9.8e-37 157.5 108 75.0
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 1.3e-36 157.1 104 74.0
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 2.4e-35 152.9 138 58.7
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 4.6e-34 148.7 136 58.8
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 5.9e-34 148.3 82 82.9
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.0e-33 146.0 178 52.2
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 5.6e-32 141.7 161 50.9
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 2.8e-31 139.4 116 60.3
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 4.0e-30 135.6 103 67.0
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 7.5e-29 131.3 120 51.7
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.9e-28 129.4 125 56.0
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.7e-25 120.2 127 48.0
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 5.6e-24 115.2 93 57.0
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 7.3e-24 114.8 125 51.2
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 3.6e-23 112.5 138 46.4
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 4.0e-22 109.0 73 75.3
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.9e-22 107.8 123 56.9
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.9e-22 107.8 123 56.9
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.9e-22 107.8 123 56.9
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 1.5e-21 107.1 61 85.2
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 2.6e-21 106.3 125 52.8
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.4e-21 105.9 118 55.9
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 1.1e-19 100.9 88 63.6
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 1.4e-19 100.5 84 63.1
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 1.9e-19 100.1 49 87.8
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 2.4e-19 99.8 53 86.8
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 7.1e-19 98.2 77 66.2
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 2.7e-18 96.3 86 55.8
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 2.3e-17 93.2 52 78.8
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 2.8e-15 86.3 131 42.0
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 9.9e-13 77.8 79 54.4
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 2.1e-10 70.1 94 46.8
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 4.6e-10 68.9 41 80.5
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 1.5e-08 63.9 62 53.2
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 9.6e-08 61.2 90 46.7
Haze_09033 Corylus avellana HOM05D000491 ORTHO05D000359 2.8e-07 59.7 78 50.0
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 3.6e-07 59.3 88 42.0
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 6.2e-07 58.5 68 54.4
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 6.2e-07 58.5 68 54.4
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 8.1e-07 58.2 40 72.5
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 2.4e-06 56.6 41 68.3
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 2.4e-06 56.6 41 68.3
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 2.4e-06 56.6 41 68.3
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 2.4e-06 56.6 41 68.3
Medtr5g011478 Medicago truncatula HOM05D005851 ORTHO05D007137 3.1e-06 56.2 41 68.3
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 8.9e-06 54.7 72 45.8


User provided reference genes

Program Settings