Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 0.0e+00 1292.3 722 100.0
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 4.2e-136 489.6 754 43.8
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 5.0e-129 466.1 751 41.1
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 4.8e-124 449.5 755 40.4
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 1.1e-123 448.4 730 41.1
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 2.6e-122 443.7 761 41.7
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 7.7e-122 442.2 757 42.5
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 6.5e-121 439.1 748 42.8
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 3.6e-119 433.3 761 41.8
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 1.8e-118 431.0 811 42.0
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 7.4e-117 425.6 761 40.3
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 4.8e-116 422.9 733 41.2
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 1.4e-115 421.4 749 40.3
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 1.6e-114 417.9 756 41.9
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 2.0e-114 417.5 771 39.2
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 1.7e-113 414.5 677 41.4
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 5.5e-112 409.5 779 38.6
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 9.4e-112 408.7 744 40.5
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 1.6e-111 407.9 744 40.5
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 6.1e-111 406.0 733 40.9
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 1.4e-110 404.8 746 43.8
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 3.0e-110 403.7 759 43.1
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 2.2e-108 397.5 750 39.1
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 4.1e-107 393.3 757 38.4
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 1.6e-106 391.3 671 40.8
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.8e-105 386.7 758 38.4
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 6.1e-103 379.4 770 39.2
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 1.0e-102 378.6 751 37.8
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 2.0e-101 374.4 667 39.7
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 9.8e-101 372.1 769 37.6
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 1.8e-99 367.9 691 39.8
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 4.1e-99 366.7 657 40.5
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 5.4e-99 366.3 675 38.4
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 5.4e-99 366.3 675 38.4
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 2.0e-98 364.4 655 39.5
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 2.3e-97 360.9 660 39.2
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 3.8e-97 360.1 693 38.0
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 5.5e-96 356.3 690 39.0
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 9.5e-96 355.5 738 35.9
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 3.6e-95 353.6 646 39.6
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 3.6e-95 353.6 655 37.9
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 6.1e-95 352.8 736 38.9
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 2.3e-94 350.9 654 39.4
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 6.8e-94 349.4 745 38.0
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 8.9e-94 349.0 645 39.4
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 8.9e-94 349.0 743 38.0
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 8.9e-94 349.0 645 39.4
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 8.9e-94 349.0 645 39.4
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 1.5e-93 348.2 747 36.8
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 1.3e-92 345.1 745 35.8
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 8.3e-92 342.4 745 35.4
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 2.3e-89 334.3 517 40.0
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 2.9e-89 334.0 755 35.6
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 6.6e-89 332.8 959 32.7
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 1.9e-88 331.3 573 40.0
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 6.8e-86 322.8 667 37.2
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 1.2e-85 322.0 675 36.0
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.4e-85 320.5 742 35.8
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 2.9e-84 317.4 656 36.3
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 2.9e-84 317.4 634 37.2
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 4.1e-83 313.5 698 36.8
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 5.4e-83 313.2 655 35.7
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 1.6e-82 311.6 651 35.9
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 3.5e-82 310.5 682 36.5
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 1.5e-80 305.1 408 48.3
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 1.9e-80 304.7 667 35.1
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 1.9e-80 304.7 696 34.2
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 2.5e-80 304.3 666 36.0
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 7.3e-80 302.8 529 38.4
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 2.1e-79 301.2 645 34.9
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 2.1e-79 301.2 776 35.4
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 2.1e-79 301.2 927 31.9
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 4.7e-79 300.1 733 34.2
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 5.2e-78 296.6 832 35.6
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 5.2e-78 296.6 724 32.9
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 1.5e-77 295.0 728 32.6
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 3.4e-77 293.9 345 48.1
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 5.8e-77 293.1 650 35.1
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 9.8e-77 292.4 591 35.9
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 1.7e-76 291.6 337 50.1
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 2.2e-76 291.2 746 33.6
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 3.3e-72 277.3 639 35.4
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 5.6e-72 276.6 749 35.1
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 5.6e-72 276.6 655 34.5
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 2.4e-62 244.6 763 30.9
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 7.6e-61 239.6 713 31.1
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 6.6e-57 226.5 263 47.5
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 2.1e-55 221.5 272 45.2
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 8.1e-55 219.5 644 32.1
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 1.6e-47 195.3 225 49.8
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 1.2e-45 189.1 509 29.3
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 8.7e-41 172.9 159 61.0
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 2.7e-34 151.4 714 24.8
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 3.9e-33 147.5 515 27.6
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 2.5e-32 144.8 450 31.6
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 8.2e-31 139.8 151 52.3
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 5.9e-29 133.7 163 49.1
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 2.9e-28 131.3 401 38.9
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 3.5e-26 124.4 155 46.5
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 4.6e-26 124.0 298 35.2
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 1.3e-25 122.5 133 51.1
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 1.1e-22 112.8 163 42.9
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 2.7e-18 98.2 374 28.6
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 1.8e-17 95.5 364 29.4
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 3.3e-16 91.3 248 32.3
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 1.1e-14 86.3 327 30.9
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 1.8e-14 85.5 530 23.4
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 6.5e-12 77.0 285 28.8
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 3.6e-10 71.2 185 37.8
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 2.6e-08 65.1 128 36.7
SMO367G0412 Selaginella moellendorffii HOM05D006140 ORTHO05D007834 2.6e-08 65.1 600 19.3
unitig_32.g10972 Utricularia gibba HOM05D006140 ORTHO05D007834 1.3e-07 62.8 188 32.4


User provided reference genes

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