Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 4.0e-103 378.3 213 100.0
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 1.4e-63 246.9 209 67.5
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 2.7e-59 232.6 215 62.8
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 7.9e-59 231.1 215 63.3
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 3.9e-58 228.8 211 63.0
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 6.7e-58 228.0 209 62.7
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 8.8e-58 227.6 214 61.2
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 8.8e-58 227.6 209 61.7
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 1.1e-57 227.3 213 60.6
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 1.1e-57 227.3 210 62.9
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 1.5e-57 226.9 209 61.7
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 2.6e-57 226.1 210 59.5
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 4.4e-57 225.3 208 61.1
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 7.4e-57 224.6 215 61.4
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 9.7e-57 224.2 215 60.0
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.3e-56 223.8 215 59.1
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 4.8e-56 221.9 215 61.9
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 4.8e-56 221.9 215 61.4
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 4.8e-56 221.9 212 62.3
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 8.2e-56 221.1 210 60.0
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.1e-55 220.7 215 59.5
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.4e-55 220.3 215 59.5
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 1.4e-55 220.3 215 61.4
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 2.4e-55 219.5 213 62.4
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.4e-55 219.5 214 59.3
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 2.4e-55 219.5 215 60.5
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.4e-55 219.5 215 59.1
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 3.1e-55 219.2 213 58.7
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 5.3e-55 218.4 215 59.1
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 9.1e-55 217.6 213 60.1
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 5.9e-54 214.9 215 59.1
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 8.5e-53 211.1 210 57.1
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 8.5e-53 211.1 210 58.1
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 8.5e-53 211.1 219 56.6
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.9e-52 209.9 210 60.0
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 7.2e-52 208.0 215 57.7
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 9.4e-52 207.6 207 58.9
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 1.2e-51 207.2 215 58.1
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 2.7e-51 206.1 214 57.9
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 3.6e-51 205.7 210 57.6
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 1.0e-50 204.1 214 57.5
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 1.0e-50 204.1 210 56.7
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 8.8e-50 201.1 221 57.0
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 1.5e-49 200.3 213 57.7
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 1.5e-49 200.3 207 58.0
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.0e-49 199.9 211 57.8
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 2.0e-49 199.9 210 59.5
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 3.3e-49 199.1 210 57.1
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 5.7e-49 198.4 211 55.0
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 5.7e-49 198.4 214 54.2
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 5.7e-49 198.4 211 55.9
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 7.5e-49 198.0 209 54.5
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 9.7e-49 197.6 208 56.2
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 2.2e-48 196.4 208 52.9
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 2.8e-48 196.1 222 55.9
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 4.8e-48 195.3 177 63.3
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 5.3e-47 191.8 210 54.3
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 7.0e-47 191.4 210 55.7
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.6e-46 190.3 204 59.3
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 3.5e-46 189.1 215 53.5
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 5.0e-45 185.3 211 53.1
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.1e-44 184.1 211 52.6
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 4.2e-44 182.2 222 51.8
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 5.5e-44 181.8 207 51.7
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 7.2e-44 181.4 207 55.1
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 1.2e-43 180.6 199 53.3
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.2e-43 180.6 211 49.8
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 2.1e-43 179.9 211 54.0
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.7e-43 179.5 211 49.8
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 6.1e-43 178.3 207 53.1
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 6.1e-43 178.3 212 50.5
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 8.0e-43 177.9 211 50.2
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.0e-42 177.6 211 54.5
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 1.4e-42 177.2 211 50.2
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 1.4e-42 177.2 211 54.5
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 2.3e-42 176.4 211 54.0
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 3.0e-42 176.0 211 50.7
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 5.2e-42 175.3 209 51.7
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.2e-41 174.1 216 50.0
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.6e-41 172.9 211 48.8
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 3.4e-41 172.6 211 50.7
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 5.7e-41 171.8 210 50.0
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 5.7e-41 171.8 211 49.3
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 7.5e-41 171.4 212 49.1
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 1.3e-40 170.6 214 48.1
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.8e-40 169.5 211 49.3
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 3.7e-40 169.1 208 46.6
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 6.3e-40 168.3 213 48.8
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 1.1e-39 167.5 214 48.1
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 1.4e-39 167.2 211 52.1
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 1.6e-38 163.7 210 47.6
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 3.5e-38 162.5 211 50.2
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 3.5e-38 162.5 214 50.5
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 1.0e-37 161.0 205 49.8
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 1.3e-37 160.6 210 48.1
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 2.2e-37 159.8 213 47.4
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 5.0e-37 158.7 209 44.5
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 6.5e-37 158.3 209 46.9
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 3.2e-36 156.0 209 48.3
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 3.2e-36 156.0 213 49.3
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 7.2e-36 154.8 170 54.1
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 9.4e-36 154.5 209 45.5
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 9.4e-36 154.5 209 48.3
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.2e-35 154.1 205 48.8
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 3.6e-35 152.5 163 55.8
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 8.0e-35 151.4 210 48.6
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 2.3e-34 149.8 212 48.1
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 4.0e-34 149.1 207 44.9
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 6.8e-34 148.3 205 45.4
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 1.5e-33 147.1 199 47.2
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 2.6e-33 146.4 199 45.2
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 5.7e-33 145.2 215 41.9
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 1.3e-32 144.1 199 44.7
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 2.2e-32 143.3 212 43.4
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 2.8e-32 142.9 220 41.8
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 6.3e-32 141.7 223 43.5
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.4e-31 140.6 208 47.1
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 3.1e-31 139.4 212 41.0
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.1e-31 139.0 211 42.7
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 7.0e-31 138.3 211 41.7
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.6e-30 137.1 191 45.0
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 2.0e-30 136.7 195 44.1
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 3.5e-30 136.0 204 42.6
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 4.5e-30 135.6 212 41.0
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 7.7e-30 134.8 141 55.3
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 6.6e-29 131.7 193 43.0
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 6.6e-29 131.7 193 43.0
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 6.6e-29 131.7 193 44.0
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 2.5e-28 129.8 221 42.1
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 4.3e-28 129.0 215 40.9
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 4.3e-28 129.0 197 42.1
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 5.6e-28 128.6 193 42.5
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 7.3e-28 128.3 193 42.5
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.6e-27 127.1 202 43.1
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.0e-26 124.4 141 52.5
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 1.8e-26 123.6 184 42.4
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.5e-25 120.6 198 39.4
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 2.0e-25 120.2 139 50.4
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 7.5e-25 118.2 218 40.8
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 1.1e-23 114.4 212 38.2
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 1.4e-23 114.0 118 53.4
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 1.8e-23 113.6 213 40.8
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 4.1e-23 112.5 212 38.2
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 4.1e-23 112.5 213 39.0
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 1.2e-19 100.9 210 39.5
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 1.6e-19 100.5 207 40.6
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 4.7e-19 99.0 211 38.9
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 4.4e-17 92.4 210 35.7
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.3e-16 90.9 118 47.5
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 2.9e-16 89.7 138 42.0
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 3.2e-15 86.3 212 34.9
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 4.9e-08 62.4 81 51.9


User provided reference genes

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