Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 2.1e-41 171.8 80 100.0
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 5.9e-23 110.5 73 69.9
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 3.6e-20 101.3 73 64.4
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 5.7e-18 94.0 77 63.6
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 7.4e-18 93.6 80 57.5
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 7.4e-18 93.6 82 53.7
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 9.7e-18 93.2 66 62.1
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 2.2e-17 92.0 71 60.6
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 2.2e-17 92.0 79 57.0
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 2.2e-17 92.0 72 58.3
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 2.8e-17 91.7 54 64.8
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 6.3e-17 90.5 50 74.0
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 8.2e-17 90.1 46 76.1
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.1e-16 89.7 69 60.9
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 1.1e-16 89.7 80 55.0
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 1.4e-16 89.4 69 58.0
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 1.4e-16 89.4 78 56.4
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 1.4e-16 89.4 78 56.4
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 1.8e-16 89.0 70 55.7
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 1.8e-16 89.0 70 55.7
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 1.8e-16 89.0 70 55.7
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 2.4e-16 88.6 70 55.7
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 4.1e-16 87.8 69 56.5
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 5.3e-16 87.4 80 50.0
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 5.3e-16 87.4 70 55.7
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 1.2e-15 86.3 72 52.8
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.6e-15 85.1 48 68.8
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 2.6e-15 85.1 72 54.2
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 2.6e-15 85.1 81 54.3
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 2.6e-15 85.1 81 54.3
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 5.9e-15 84.0 80 52.5
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 7.7e-15 83.6 69 56.5
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 1.0e-14 83.2 73 50.7
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 2.9e-14 81.6 69 58.0
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 8.5e-14 80.1 72 52.8
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 8.5e-14 80.1 68 57.4
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 2.5e-13 78.6 76 44.7
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.5e-13 77.4 72 52.8
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 5.5e-13 77.4 82 50.0
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 7.2e-13 77.0 76 51.3
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 9.4e-13 76.6 74 48.6
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.2e-12 76.3 72 51.4
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 1.2e-12 76.3 79 50.6
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.6e-12 75.9 76 52.6
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 2.1e-12 75.5 73 46.6
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.1e-12 75.5 50 58.0
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 2.1e-12 75.5 76 52.6
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 2.1e-12 75.5 79 50.6
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.1e-12 75.5 76 52.6
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 2.1e-12 75.5 82 48.8
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 2.1e-12 75.5 79 46.8
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 6.1e-12 73.9 73 46.6
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 6.1e-12 73.9 79 49.4
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 6.1e-12 73.9 71 45.1
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.0e-12 73.6 84 48.8
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.0e-12 73.6 84 48.8
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 8.0e-12 73.6 58 58.6
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 1.0e-11 73.2 72 47.2
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 1.4e-11 72.8 68 48.5
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.8e-11 72.4 67 50.7
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 2.3e-11 72.0 68 54.4
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 2.3e-11 72.0 58 58.6
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 5.2e-11 70.9 81 46.9
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.2e-11 70.9 77 50.6
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 6.7e-11 70.5 71 46.5
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 8.8e-11 70.1 68 45.6
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 8.8e-11 70.1 45 62.2
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 8.8e-11 70.1 68 54.4
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 8.8e-11 70.1 70 50.0
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.1e-10 69.7 46 60.9
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.0e-10 68.9 52 61.5
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 2.0e-10 68.9 75 52.0
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.6e-10 68.6 54 59.3
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 3.3e-10 68.2 68 47.1
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 3.3e-10 68.2 77 41.6
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 4.4e-10 67.8 52 59.6
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 4.4e-10 67.8 50 58.0
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 7.5e-10 67.0 50 56.0
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 9.7e-10 66.6 67 47.8
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 1.3e-09 66.2 72 41.7
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 2.8e-09 65.1 50 58.0
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 2.8e-09 65.1 84 47.6
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 6.3e-09 63.9 84 44.0
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 6.3e-09 63.9 60 51.7
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 1.8e-08 62.4 65 43.1
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 2.4e-08 62.0 75 45.3
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 4.1e-08 61.2 51 54.9
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 4.1e-08 61.2 70 41.4
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 7.0e-08 60.5 71 49.3
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 9.1e-08 60.1 78 44.9
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 1.2e-07 59.7 67 47.8
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.7e-07 58.5 71 47.9
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 3.5e-07 58.2 44 56.8
Peaxi162Scf00268g00024 Petunia axillaris HOM05D008200 ORTHO05D007342 5.9e-07 57.4 79 48.1
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 1.0e-06 56.6 69 44.9
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 1.3e-06 56.2 53 45.3
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.7e-06 55.8 79 43.0
MBI02_g08723_MAGBIO Magnolia biondii HOM05D007628 ORTHO05D007342 3.8e-06 54.7 36 55.6
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 5.0e-06 54.3 50 52.0
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 5.0e-06 54.3 66 40.9
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 8.5e-06 53.5 48 47.9


User provided reference genes

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