Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 2.3e-133 478.8 220 100.0
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 1.1e-98 363.6 225 76.0
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 2.6e-97 359.0 220 74.1
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 3.4e-97 358.6 224 73.2
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 2.9e-96 355.5 220 74.5
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 3.2e-95 352.1 224 71.9
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 5.4e-95 351.3 222 70.7
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 5.4e-95 351.3 225 72.4
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 5.4e-95 351.3 223 72.2
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 5.4e-95 351.3 220 74.5
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 7.1e-95 350.9 219 73.1
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 9.3e-95 350.5 225 69.8
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 9.3e-95 350.5 220 72.7
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 1.2e-94 350.1 220 72.3
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 1.6e-94 349.7 223 72.6
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 2.7e-94 349.0 225 70.7
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 3.5e-94 348.6 224 71.9
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 4.6e-94 348.2 219 71.7
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 1.0e-93 347.1 226 72.6
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 2.3e-93 345.9 224 71.9
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 3.0e-93 345.5 226 71.2
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 3.0e-93 345.5 223 69.5
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 5.1e-93 344.7 220 71.8
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 5.1e-93 344.7 220 71.8
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 5.1e-93 344.7 224 70.1
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 8.7e-93 344.0 224 71.9
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 1.1e-92 343.6 223 73.5
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 1.5e-92 343.2 224 69.6
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 2.5e-92 342.4 222 73.4
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 2.5e-92 342.4 220 72.3
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 4.3e-92 341.7 239 66.9
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 7.4e-92 340.9 222 72.1
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 7.4e-92 340.9 221 71.5
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 9.6e-92 340.5 217 69.1
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 1.3e-91 340.1 219 72.1
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 1.3e-91 340.1 221 71.9
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 1.6e-91 339.7 221 70.6
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 2.1e-91 339.3 223 72.2
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 2.8e-91 339.0 217 69.1
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 2.8e-91 339.0 216 68.5
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 2.8e-91 339.0 225 69.8
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 4.8e-91 338.2 225 69.8
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 6.2e-91 337.8 217 68.7
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 8.1e-91 337.4 217 68.7
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 1.4e-90 336.7 221 71.5
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 1.4e-90 336.7 227 66.1
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 2.4e-90 335.9 221 67.9
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 6.9e-90 334.3 221 67.9
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 2.0e-89 332.8 215 66.5
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 3.4e-89 332.0 221 67.9
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 4.5e-89 331.6 226 67.7
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 7.6e-89 330.9 224 68.3
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 7.6e-89 330.9 226 69.0
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 1.3e-88 330.1 265 59.2
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 1.7e-88 329.7 226 67.7
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 2.2e-88 329.3 217 71.4
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 2.9e-88 328.9 219 68.0
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 3.8e-88 328.6 220 68.6
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 3.8e-88 328.6 219 69.4
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 4.9e-88 328.2 222 66.2
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 6.4e-88 327.8 217 71.0
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 1.4e-87 326.6 218 65.1
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 1.9e-87 326.2 223 67.7
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 3.2e-87 325.5 217 66.4
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 5.5e-87 324.7 227 65.6
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 7.1e-87 324.3 222 68.0
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 7.1e-87 324.3 218 64.2
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 9.3e-87 323.9 224 64.7
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 1.2e-86 323.6 222 68.0
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 1.5e-84 316.6 216 68.5
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 2.1e-83 312.8 221 65.6
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 1.8e-82 309.7 230 66.1
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 2.4e-82 309.3 220 64.5
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 9.0e-82 307.4 217 62.2
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 1.2e-81 307.0 232 61.6
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 1.2e-81 307.0 296 54.4
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 2.0e-81 306.2 236 62.7
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 3.8e-80 302.0 191 72.8
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.4e-79 300.1 196 71.9
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 7.1e-79 297.7 192 72.4
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 1.3e-77 293.5 260 55.0
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 5.1e-77 291.6 191 70.7
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 8.7e-77 290.8 199 69.8
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 1.1e-76 290.4 189 71.4
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 3.3e-76 288.9 185 74.1
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 3.3e-76 288.9 188 68.6
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 4.3e-76 288.5 219 59.4
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 9.6e-76 287.3 193 71.0
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 1.6e-75 286.6 187 67.4
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 2.1e-75 286.2 189 70.9
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 1.1e-74 283.9 182 68.7
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 2.4e-74 282.7 196 66.8
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 6.9e-74 281.2 189 67.2
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 7.6e-73 277.7 184 66.8
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 1.0e-72 277.3 226 61.1
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 5.0e-72 275.0 182 64.8
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 3.2e-71 272.3 197 67.0
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 1.2e-70 270.4 183 65.0
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 4.6e-70 268.5 191 67.0
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 4.6e-70 268.5 191 67.0
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 6.1e-70 268.1 184 63.6
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 5.7e-68 261.5 188 63.3
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 2.8e-67 259.2 225 56.9
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 2.8e-67 259.2 225 56.9
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 2.8e-67 259.2 217 55.8
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 6.3e-67 258.1 222 60.8
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 5.9e-65 251.5 200 60.0
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 7.7e-65 251.1 225 56.4
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 1.6e-62 243.4 192 56.2
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 8.8e-61 237.7 195 55.4
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 7.9e-54 214.5 141 68.8
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 1.4e-53 213.8 215 44.7
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 3.9e-53 212.2 154 64.9
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 2.6e-49 199.5 133 65.4
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 4.0e-37 159.1 82 76.8
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 2.0e-33 146.7 90 64.4
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 4.1e-18 95.9 192 32.3
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 7.8e-09 65.1 62 41.9
GSVIVG01018488001 Vitis vinifera HOM05D006795 ORTHO05D008573 3.3e-07 59.7 30 76.7


User provided reference genes

Program Settings