Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 0.0e+00 1109.0 586 100.0
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.5e-264 916.0 590 82.7
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 6.2e-263 910.6 588 82.7
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.1e-259 899.8 593 82.5
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.4e-259 899.4 587 81.9
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 1.6e-258 896.0 588 82.8
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.0e-257 893.3 564 83.3
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 1.0e-257 893.3 588 81.8
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.7e-257 892.5 587 80.9
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 5.1e-257 891.0 586 80.7
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.1e-256 889.8 587 80.7
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.9e-256 889.0 590 80.7
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 4.3e-256 887.9 592 79.9
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 5.6e-256 887.5 533 86.3
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 5.6e-256 887.5 587 80.9
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 4.8e-255 884.4 591 80.0
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 6.2e-255 884.0 610 79.2
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 1.1e-254 883.2 578 81.5
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.4e-254 882.9 591 80.2
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.4e-254 882.9 540 86.5
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.4e-254 882.9 589 80.5
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 4.0e-254 881.3 587 80.6
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 5.3e-254 880.9 551 84.4
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.0e-253 879.0 586 80.5
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.4e-253 878.2 589 80.8
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 4.4e-253 877.9 566 83.2
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 5.8e-253 877.5 569 81.9
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 5.8e-253 877.5 591 79.0
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 7.6e-253 877.1 586 80.0
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 9.9e-253 876.7 587 79.4
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 9.9e-253 876.7 588 78.1
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.7e-252 875.9 589 79.6
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.7e-252 875.9 592 79.1
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 2.2e-252 875.5 594 79.1
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 4.9e-252 874.4 538 84.4
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 4.9e-252 874.4 592 79.1
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 4.9e-252 874.4 586 78.8
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 8.4e-252 873.6 587 79.0
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.1e-251 873.2 587 79.0
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 1.1e-251 873.2 598 78.8
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.9e-251 872.5 588 79.1
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.9e-251 872.5 588 79.3
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 2.4e-251 872.1 587 80.9
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 4.2e-251 871.3 589 77.9
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 4.2e-251 871.3 532 84.6
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 1.6e-250 869.4 551 83.1
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 4.6e-250 867.8 556 81.7
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 4.6e-250 867.8 553 82.3
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 6.0e-250 867.5 556 81.8
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 6.0e-250 867.5 538 83.6
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 6.0e-250 867.5 559 82.8
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 6.0e-250 867.5 564 82.6
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 7.9e-250 867.1 556 81.7
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 1.7e-249 865.9 553 81.9
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 2.3e-249 865.5 596 77.7
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 3.0e-249 865.1 627 76.9
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 3.9e-249 864.8 537 84.4
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 3.9e-249 864.8 532 82.9
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 3.9e-249 864.8 593 78.1
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 5.1e-249 864.4 595 77.5
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 6.6e-249 864.0 559 81.6
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 6.6e-249 864.0 587 78.7
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 8.7e-249 863.6 591 79.0
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.1e-248 863.2 608 76.8
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.1e-248 863.2 564 80.9
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 3.3e-248 861.7 535 83.4
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 4.3e-248 861.3 575 81.0
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 9.6e-248 860.1 584 78.1
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 9.6e-248 860.1 576 79.9
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 1.3e-247 859.8 531 84.4
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 1.6e-247 859.4 553 81.4
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.1e-246 856.7 503 87.7
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 1.4e-246 856.3 540 83.9
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.8e-246 855.9 494 88.7
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 2.0e-245 852.4 552 81.5
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 3.4e-245 851.7 548 82.8
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 4.5e-245 851.3 613 75.9
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 4.5e-245 851.3 580 79.0
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.3e-244 849.7 588 78.1
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 1.7e-244 849.4 508 85.8
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.7e-244 849.4 596 76.5
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.4e-243 845.5 529 83.7
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 7.1e-243 844.0 572 79.0
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 2.3e-241 839.0 595 76.5
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 3.0e-241 838.6 589 75.7
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 2.5e-240 835.5 585 75.4
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 1.4e-238 829.7 539 81.4
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 4.0e-238 828.2 593 74.7
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 1.2e-237 826.6 566 77.2
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 7.6e-237 823.9 550 80.9
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.2e-236 822.4 532 82.3
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 2.9e-236 822.0 598 74.1
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.8e-236 821.6 621 73.8
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 6.0e-234 814.3 599 73.6
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 5.1e-233 811.2 553 79.7
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 1.9e-232 809.3 534 81.3
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 9.0e-230 800.4 501 83.8
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 2.2e-228 795.8 534 77.7
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 1.1e-227 793.5 497 84.7
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 7.4e-224 780.8 467 86.7
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 3.1e-222 775.4 435 92.6
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.2e-218 763.5 489 79.1
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 6.1e-218 761.1 583 72.0
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.8e-217 759.6 493 80.9
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 2.2e-215 752.7 437 89.2
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 2.0e-213 746.1 465 81.9
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 7.7e-213 744.2 746 58.2
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 2.9e-212 742.3 437 87.9
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.6e-210 735.3 435 88.3
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 6.1e-210 734.6 522 72.8
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.0e-208 729.6 570 70.0
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 3.1e-206 722.2 546 69.6
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.5e-203 713.4 488 74.0
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.8e-199 699.1 534 68.5
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 6.5e-196 688.0 396 90.2
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 4.7e-194 681.8 397 88.9
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 7.5e-192 674.5 439 78.8
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 7.2e-187 657.9 389 87.7
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 1.8e-185 653.3 404 82.4
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 3.4e-184 649.0 435 76.3
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 3.1e-182 642.5 424 77.4
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 5.0e-180 635.2 427 76.6
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 1.2e-178 630.6 440 78.0
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 7.5e-176 621.3 418 75.8
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.7e-173 612.8 425 73.2
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 3.5e-173 612.5 592 60.5
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 9.2e-166 587.8 464 70.3
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 5.4e-158 562.0 316 89.6
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 3.0e-156 556.2 533 60.6
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.3e-153 546.6 443 70.4
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 4.4e-152 542.3 451 68.7
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 2.7e-149 533.1 392 74.2
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.5e-136 490.7 299 84.9
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.2e-133 481.1 354 68.6
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 1.8e-129 467.2 269 87.7
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.4e-126 457.6 261 88.9
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.6e-125 454.1 336 75.9
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 2.1e-125 453.8 285 83.2
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.5e-123 447.6 573 46.4
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 6.7e-92 342.4 484 47.5
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.2e-83 315.1 578 41.7
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.0e-79 299.7 213 70.9
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 1.8e-76 291.2 186 78.0
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 6.5e-71 272.7 213 70.0
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 1.0e-68 265.4 317 51.7
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 4.0e-60 236.9 142 85.2
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 3.3e-54 217.2 194 58.8
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.8e-52 211.5 172 63.4
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 7.8e-48 196.1 118 86.4
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 2.3e-47 194.5 126 77.8
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.5e-35 155.2 148 58.8
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.5e-35 155.2 98 75.5
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.9e-33 148.3 109 77.1
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.2e-32 145.6 94 72.3
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 3.0e-31 141.0 131 63.4
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 4.4e-27 127.1 69 92.8
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.1e-25 122.5 78 80.8
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 3.5e-24 117.5 70 88.6
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 7.8e-24 116.3 79 73.4
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.7e-23 115.2 94 61.7
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 2.3e-23 114.8 90 61.1
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 2.4e-20 104.8 61 83.6
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 1.6e-16 92.0 53 90.6
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.1e-12 79.3 149 36.2
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 2.0e-11 75.1 58 67.2
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 5.8e-11 73.6 51 68.6
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 2.4e-09 68.2 93 48.4
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 1.1e-06 59.3 39 76.9
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 1.9e-06 58.5 58 50.0
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 5.6e-06 57.0 54 57.4


User provided reference genes

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