Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 7.6e-127 457.2 236 100.0
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 2.2e-73 279.6 222 63.1
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 6.3e-73 278.1 247 58.7
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 1.4e-72 276.9 256 57.4
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.8e-72 276.6 263 57.4
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 2.4e-72 276.2 247 60.7
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 3.1e-72 275.8 256 57.4
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 4.1e-72 275.4 255 58.8
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 3.4e-71 272.3 256 56.6
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 4.5e-71 271.9 267 56.6
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 4.5e-71 271.9 256 57.4
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 5.9e-71 271.6 247 59.1
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 5.9e-71 271.6 255 58.4
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 2.2e-70 269.6 246 58.9
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 6.5e-70 268.1 247 57.5
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.5e-70 268.1 262 56.1
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 1.4e-69 266.9 247 57.5
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 1.9e-69 266.5 246 58.1
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.5e-69 266.2 263 55.5
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 4.2e-69 265.4 248 58.1
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 4.2e-69 265.4 255 56.9
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 4.2e-69 265.4 248 59.3
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 4.2e-69 265.4 263 54.8
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 5.5e-69 265.0 248 57.7
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 5.5e-69 265.0 256 56.6
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 1.2e-68 263.8 255 56.5
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.6e-68 263.5 243 59.7
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 3.6e-68 262.3 256 56.6
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 6.1e-68 261.5 244 58.2
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.0e-67 260.8 257 54.9
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.4e-67 260.4 262 54.2
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 1.8e-67 260.0 247 56.7
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 1.8e-67 260.0 262 53.8
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 2.3e-67 259.6 241 58.5
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 3.9e-67 258.8 247 56.3
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 3.9e-67 258.8 247 55.1
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 5.1e-67 258.5 239 59.4
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 6.7e-67 258.1 260 56.2
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 6.7e-67 258.1 244 57.8
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 8.8e-67 257.7 261 54.8
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 1.1e-66 257.3 260 53.8
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 1.1e-66 257.3 244 56.6
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 2.0e-66 256.5 247 56.3
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 2.0e-66 256.5 247 54.7
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 2.0e-66 256.5 264 53.4
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 2.0e-66 256.5 250 54.8
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 2.6e-66 256.1 261 52.5
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 3.3e-66 255.8 261 54.4
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 3.3e-66 255.8 234 57.3
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 4.4e-66 255.4 279 51.3
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 4.4e-66 255.4 254 54.3
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 4.4e-66 255.4 243 57.6
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 4.4e-66 255.4 256 54.3
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 5.7e-66 255.0 264 51.9
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 7.4e-66 254.6 262 55.0
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 7.4e-66 254.6 246 55.3
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 7.4e-66 254.6 261 51.7
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 1.3e-65 253.8 270 52.6
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 1.7e-65 253.4 264 51.5
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.2e-65 253.1 265 54.0
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 2.2e-65 253.1 265 52.8
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.7e-65 252.3 282 52.5
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 4.8e-65 251.9 256 53.1
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 6.3e-65 251.5 244 55.3
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 6.3e-65 251.5 264 51.9
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.1e-64 250.8 259 52.9
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.8e-64 250.0 250 53.2
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 3.1e-64 249.2 269 52.0
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 3.1e-64 249.2 241 57.3
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 4.1e-64 248.8 243 56.4
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 5.3e-64 248.4 250 54.0
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 7.0e-64 248.1 257 52.1
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 9.1e-64 247.7 264 52.7
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 9.1e-64 247.7 254 53.9
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.5e-63 246.9 246 54.5
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 3.5e-63 245.7 245 53.9
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 3.5e-63 245.7 229 56.3
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 4.5e-63 245.4 293 48.8
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 4.5e-63 245.4 265 52.1
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 1.3e-62 243.8 250 52.8
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.7e-62 243.4 246 53.3
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 2.2e-62 243.0 230 57.8
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.9e-62 242.7 248 52.8
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 2.9e-62 242.7 260 50.4
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 2.9e-62 242.7 254 54.3
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 3.8e-62 242.3 219 59.4
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 3.8e-62 242.3 237 54.9
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 5.0e-62 241.9 267 51.3
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.9e-61 240.0 248 51.2
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 5.5e-61 238.4 258 51.9
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 7.2e-61 238.0 234 53.8
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 9.4e-61 237.7 211 58.8
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 1.2e-60 237.3 232 54.7
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.6e-60 236.9 272 50.7
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 2.1e-60 236.5 227 55.1
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 2.1e-60 236.5 247 53.0
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 2.1e-60 236.5 267 51.3
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.1e-60 236.5 269 50.6
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.7e-60 236.1 247 51.4
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 8.0e-60 234.6 211 57.8
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 1.0e-59 234.2 227 55.1
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 1.4e-59 233.8 251 50.6
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.4e-59 233.8 247 51.0
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.8e-59 233.4 211 58.3
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.8e-59 233.4 249 51.8
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.3e-59 233.0 243 53.1
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 3.0e-59 232.6 251 49.8
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 4.0e-59 232.3 250 50.8
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 4.0e-59 232.3 247 50.6
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 4.0e-59 232.3 247 51.0
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 5.2e-59 231.9 211 58.3
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 2.0e-58 229.9 247 50.2
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 3.3e-58 229.2 325 44.0
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 5.7e-58 228.4 250 49.2
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 9.7e-58 227.6 253 48.6
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 9.7e-58 227.6 259 49.0
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 1.3e-57 227.3 272 47.4
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.7e-57 226.9 289 45.7
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 1.7e-57 226.9 259 49.0
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 1.7e-57 226.9 247 49.8
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 6.3e-57 224.9 250 50.0
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 8.2e-57 224.6 265 47.9
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 8.2e-57 224.6 247 48.6
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.6e-55 220.3 260 49.2
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 2.6e-55 219.5 244 50.8
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 3.5e-55 219.2 247 49.0
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 7.2e-53 211.5 262 48.5
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 2.7e-52 209.5 210 51.9
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 4.0e-51 205.7 262 43.9
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.3e-49 200.7 204 51.5
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 2.8e-49 199.5 190 56.8
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 6.3e-49 198.4 184 57.6
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 8.3e-49 198.0 220 50.9
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 3.1e-48 196.1 234 49.1
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 4.1e-48 195.7 257 47.1
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 5.4e-48 195.3 243 45.7
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 2.2e-46 189.9 231 47.2
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.2e-45 186.0 196 53.1
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 7.2e-45 184.9 234 45.3
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 1.6e-44 183.7 243 42.4
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.0e-43 179.1 304 39.8
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 8.8e-43 177.9 260 44.2
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 1.4e-40 170.6 252 39.3
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 1.8e-40 170.2 181 51.9
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.8e-40 170.2 184 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 5.4e-40 168.7 255 38.4
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 6.8e-35 151.8 134 56.0
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 3.4e-34 149.4 124 58.9
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 1.4e-32 144.1 161 51.6
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 5.4e-32 142.1 234 35.9
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 5.4e-32 142.1 244 37.3
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 9.2e-32 141.4 207 44.9
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 3.3e-29 132.9 105 61.0
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 9.5e-29 131.3 187 45.5
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 2.3e-27 126.7 217 36.9
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.2e-27 125.6 142 50.7
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.9e-25 119.8 100 59.0
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 3.9e-22 109.4 124 53.2
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 5.0e-22 109.0 78 69.2
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 6.6e-22 108.6 99 55.6
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.2e-18 97.8 64 71.9
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 5.4e-16 89.0 114 41.2
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 5.4e-16 89.0 114 41.2
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 1.2e-15 87.8 82 52.4
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 2.3e-14 83.6 68 57.4
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.1e-14 82.4 72 58.3
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 2.8e-12 76.6 99 41.4
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 4.0e-11 72.8 85 45.9
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.4e-09 65.5 68 50.0
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 3.2e-08 63.2 101 44.6
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 3.5e-07 59.7 50 60.0
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 6.0e-07 58.9 133 36.1


User provided reference genes

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