Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 3133.2 1587 100.0
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2995.3 1588 95.7
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2475.3 1617 77.9
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2471.4 1610 77.8
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2464.9 1609 77.7
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2455.2 1614 77.2
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2454.1 1595 78.2
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2450.2 1612 76.9
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2449.5 1613 77.3
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2449.1 1615 76.6
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2430.6 1607 75.9
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2424.8 1608 76.3
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2422.1 1605 76.3
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2417.1 1610 76.4
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2415.2 1614 76.1
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2401.7 1621 75.1
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2397.9 1611 75.4
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2390.9 1611 74.9
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2385.5 1611 75.0
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2379.0 1621 74.4
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2374.0 1621 74.3
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2373.2 1623 74.3
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2369.3 1622 74.2
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2361.6 1621 73.7
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2360.9 1621 74.0
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2358.2 1616 74.0
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2357.8 1611 74.4
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2352.4 1512 78.9
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2352.0 1616 74.0
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2351.6 1588 75.1
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2344.7 1607 73.9
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2344.7 1642 72.9
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2333.1 1640 72.8
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2332.0 1620 73.7
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2313.9 1607 74.0
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2310.4 1624 72.8
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2308.1 1606 72.0
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2300.4 1630 72.4
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2298.1 1611 73.9
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2274.6 1607 71.9
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2273.8 1509 76.6
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2260.3 1621 72.1
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2260.3 1587 70.7
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2256.1 1586 71.9
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2256.1 1595 72.2
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2251.5 1598 70.8
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2249.2 1914 63.4
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2244.5 1626 71.3
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2244.2 1606 70.4
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2243.4 1588 70.5
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2235.7 1618 71.0
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2231.8 1661 68.8
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2231.4 1635 70.7
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2230.7 1619 70.8
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2230.3 1619 70.9
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2219.5 1607 70.9
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2218.4 1619 70.1
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2210.6 1614 69.8
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2209.5 1615 69.0
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2207.9 1592 70.3
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2204.1 1606 71.0
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2202.2 1616 68.6
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2197.5 1592 71.1
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2197.2 1443 77.1
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2190.6 1604 70.3
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2187.9 1592 70.4
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2173.7 1610 69.8
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2169.8 1614 69.6
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2169.0 1610 69.6
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2167.5 1607 69.4
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2162.9 1644 68.7
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2159.0 1517 72.8
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2153.3 1604 68.8
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2152.9 1609 69.1
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2150.6 1608 68.4
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2144.0 1626 67.8
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2143.2 1610 69.1
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2139.8 1610 69.0
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2116.7 1423 74.7
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2080.1 1951 57.9
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2067.4 1410 76.1
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2067.0 1371 77.2
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2054.3 1607 66.2
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2032.3 1546 67.7
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2026.9 1598 65.8
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2012.7 1474 69.9
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2001.1 1612 65.0
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1997.6 1626 64.5
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1971.8 1594 63.9
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1943.3 1595 63.7
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1893.6 1573 61.8
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1892.5 1576 61.7
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1864.4 1201 78.2
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1674.8 1572 58.5
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1615.1 1103 73.6
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1598.6 1232 67.6
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1543.1 1418 59.7
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1436.4 1372 57.9
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1424.1 983 73.6
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1396.7 1208 59.7
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1385.9 982 72.2
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1378.2 1631 47.4
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1354.3 1610 47.5
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1263.4 1585 44.7
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1201.0 1072 58.1
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1153.3 1612 45.3
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.1e-309 1067.4 733 74.4
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 5.0e-299 1031.9 643 80.2
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 3.1e-256 889.8 617 72.4
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 8.6e-251 871.7 581 76.4
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.6e-234 815.8 601 69.1
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.3e-234 815.5 589 69.9
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 8.4e-230 802.0 603 69.5
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.1e-216 758.4 636 62.6
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 9.7e-210 735.3 536 71.1
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 2.7e-196 690.6 558 65.4
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 8.8e-195 685.6 507 71.2
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 1.7e-193 681.4 520 67.7
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 1.3e-190 671.8 639 56.5
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.7e-188 664.1 504 69.4
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 8.8e-179 632.5 412 78.4
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 1.1e-176 625.5 474 67.7
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 2.7e-175 620.9 513 63.7
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 8.6e-158 562.8 556 56.8
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 1.4e-155 555.4 338 80.5
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.8e-155 555.1 491 58.2
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.8e-124 450.7 324 70.4
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 6.4e-121 440.3 371 66.3
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 6.6e-118 430.3 385 58.4
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 8.1e-116 423.3 287 75.6
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 9.9e-114 416.4 331 71.3
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 2.2e-113 415.2 318 65.1
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.2e-111 409.5 316 65.8
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.6e-108 399.1 246 77.6
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.4e-104 386.0 355 57.5
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.3e-102 378.6 397 53.1
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 3.5e-95 354.8 251 68.9
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 6.3e-68 264.2 158 80.4
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 3.1e-67 261.9 161 75.8
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 2.0e-58 232.6 215 60.5
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 5.5e-56 224.6 142 76.8
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 2.1e-55 222.6 142 74.6
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 3.1e-51 208.8 146 69.2
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.1e-48 200.3 129 79.8
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 2.6e-45 189.1 119 79.8
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 5.4e-43 181.4 195 54.4
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.0e-39 167.5 143 62.9
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.0e-39 167.5 143 62.9
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.0e-39 167.5 143 62.9
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.0e-39 167.5 143 62.9
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.0e-39 167.5 143 62.9
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.0e-38 167.2 143 62.2
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.8e-38 164.5 143 62.2
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.5e-37 163.3 143 61.5
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 1.1e-35 157.1 99 72.7
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.2e-34 153.7 142 57.7
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 6.0e-34 151.4 100 69.0
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 8.6e-33 147.5 100 67.0
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 3.3e-32 145.6 91 73.6
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.1e-31 141.0 130 60.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-30 139.4 130 59.2
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 3.7e-28 132.1 84 75.0
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 9.2e-27 127.5 100 65.0
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 3.6e-23 115.5 89 64.0
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 6.2e-23 114.8 89 62.9
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.7e-17 96.7 74 59.5
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 5.6e-16 91.7 55 80.0
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 7.3e-16 91.3 82 59.8
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 8.1e-15 87.8 51 74.5
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 8.9e-14 84.3 95 52.6
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 3.4e-13 82.4 58 67.2
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.9e-12 79.3 54 70.4
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 7.8e-10 71.2 49 63.3
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 2.5e-08 66.2 38 76.3
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 2.4e-06 59.7 38 65.8


User provided reference genes

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