Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2153 Punica granatum HOM05D005443 ORTHO05D009021 1.5e-142 509.6 267 100.0
Prupe.3G135600 Prunus persica HOM05D005443 ORTHO05D009021 9.0e-76 287.7 240 61.7
Eucgr.A01810 Eucalyptus grandis HOM05D005443 ORTHO05D009021 3.2e-73 279.3 256 59.8
Haze_13148 Corylus avellana HOM05D005443 ORTHO05D009021 1.3e-71 273.9 260 55.4
FvH4_6g26140 Fragaria vesca HOM05D005443 ORTHO05D009021 2.3e-71 273.1 248 59.7
MD09G1249200 Malus domestica HOM05D005443 ORTHO05D009021 1.5e-70 270.4 241 59.3
Cfa014595 Carpinus fangiana HOM05D005443 ORTHO05D009021 9.6e-70 267.7 237 58.6
FAN02G0200 Fragaria x ananassa HOM05D005443 ORTHO05D009021 1.3e-69 267.3 239 60.7
Sabra19G0111200 Salix brachista HOM05D005443 ORTHO05D009021 6.2e-69 265.0 234 56.8
RcHm_v2.0_Chr2g0126191 Rosa chinensis HOM05D005443 ORTHO05D009021 3.1e-68 262.7 226 61.9
GSVIVG01020531001 Vitis vinifera HOM05D005443 ORTHO05D009021 3.1e-68 262.7 234 58.5
TAR629G1996 Trochodendron aralioides HOM05D005443 ORTHO05D009021 3.4e-67 259.2 247 57.5
CSS0011007 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 1.1e-65 254.2 230 57.4
CSS0037968 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 1.1e-65 254.2 230 57.4
Hma1.2p1_1201F.1_g266680 Hydrangea macrophylla HOM05D005443 ORTHO05D009021 1.6e-64 250.4 234 55.6
CiPaw.04G125200 Carya illinoinensis HOM05D005443 ORTHO05D009021 4.6e-64 248.8 251 53.8
Rhsim06G0144000 Rhododendron simsii HOM05D005443 ORTHO05D009021 6.0e-64 248.4 254 53.1
Duzib052G1076 Durio zibethinus HOM05D005443 ORTHO05D009021 1.0e-63 247.7 217 57.6
Thecc.02G178000 Theobroma cacao HOM05D005443 ORTHO05D009021 1.3e-63 247.3 249 55.4
ClCG07G002990 Citrullus lanatus HOM05D000092 ORTHO05D009021 3.3e-62 242.7 220 57.3
Actinidia11040 Actinidia chinensis HOM05D005443 ORTHO05D009021 5.6e-62 241.9 256 52.7
Hma1.2p1_1201F.1_g266690 Hydrangea macrophylla HOM05D005443 ORTHO05D009021 9.6e-62 241.1 197 61.4
Sabra19G0112500 Salix brachista HOM05D005443 ORTHO05D009021 1.7e-58 230.3 309 42.7
Gorai.013G075400 Gossypium raimondii HOM05D005443 ORTHO05D009021 2.9e-58 229.6 237 54.9
Gohir.D13G066100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 8.4e-58 228.0 264 51.5
Manes.12G087400 Manihot esculenta HOM05D005443 ORTHO05D009021 1.9e-57 226.9 234 53.4
Glyma.06G293500 Glycine max HOM05D005443 ORTHO05D009021 2.5e-57 226.5 239 52.7
MBI18_g16995_MAGBIO Magnolia biondii HOM05D005443 ORTHO05D009021 2.5e-57 226.5 251 51.0
TWI75G0884 Tripterygium wilfordii HOM05D005443 ORTHO05D009021 5.5e-57 225.3 216 56.9
vmacro12294 Vaccinium macrocarpon HOM05D005443 ORTHO05D009021 7.1e-57 224.9 213 57.3
Gohir.A13G055900 Gossypium hirsutum HOM05D005443 ORTHO05D009021 1.2e-56 224.2 218 56.0
Lj3g0013365 Lotus japonicus HOM05D005443 ORTHO05D009021 1.6e-56 223.8 260 51.5
Dinv23652 Davidia involucrata HOM05D005443 ORTHO05D009021 3.5e-56 222.6 177 65.5
VMungo1127G1015 Vigna mungo HOM05D005443 ORTHO05D009021 7.9e-56 221.5 268 51.1
CANSAT78G0275 Cannabis sativa HOM05D005443 ORTHO05D009021 2.3e-55 219.9 257 49.0
Sc21g0002690 Simmondsia chinensis HOM05D005443 ORTHO05D009021 6.7e-55 218.4 214 56.5
Phvul.011G114600 Phaseolus vulgaris HOM05D005443 ORTHO05D009021 9.6e-54 214.5 216 55.6
SalBow7G3189 Salvia bowleyana HOM05D005443 ORTHO05D009021 3.7e-53 212.6 216 50.9
Migut.H01082 Erythranthe guttata HOM05D005443 ORTHO05D009021 6.3e-53 211.8 221 51.6
SalBow7G4211 Salvia bowleyana HOM05D005443 ORTHO05D009021 6.3e-53 211.8 216 50.9
arahy.Tifrunner.gnm1.ann1.Y6HWTN Arachis hypogaea HOM05D005443 ORTHO05D009021 8.2e-53 211.5 240 51.7
Medtr0096s0020 Medicago truncatula HOM05D005443 ORTHO05D009021 2.4e-52 209.9 215 54.4
PGSC0003DMG400018348 Solanum tuberosum HOM05D005443 ORTHO05D009021 3.1e-52 209.5 224 50.4
Cc05_g07040 Coffea canephora HOM05D005443 ORTHO05D009021 3.4e-51 206.1 227 48.5
CAN.G248.23 Capsicum annuum HOM05D005443 ORTHO05D009021 1.9e-49 200.3 181 55.2
Thhalv10002053m.g Eutrema salsugineum HOM05D005443 ORTHO05D009021 1.9e-49 200.3 234 45.3
HanXRQChr17g0553531 Helianthus annuus HOM05D005443 ORTHO05D009021 4.2e-49 199.1 249 47.8
AL3G53840 Arabidopsis lyrata HOM05D005443 ORTHO05D009021 7.2e-49 198.4 224 45.5
Ciclev10017817m.g Citrus clementina HOM05D005443 ORTHO05D009021 1.2e-48 197.6 195 55.9
Aa31LG8G17770 Aethionema arabicum HOM05D005443 ORTHO05D009021 3.5e-48 196.1 233 45.5
Cpa.g.sc34.150 Carica papaya HOM05D005443 ORTHO05D009021 4.6e-48 195.7 214 51.9
AT2G20725 Arabidopsis thaliana HOM05D005443 ORTHO05D009021 7.9e-48 194.9 224 44.6
TPR.G21753 Trifolium pratense HOM05D005443 ORTHO05D009021 7.9e-48 194.9 190 55.8
Cfa014602 Carpinus fangiana HOM05D005443 ORTHO05D009021 2.3e-47 193.4 177 57.6
Carub.0003s3525 Capsella rubella HOM05D005443 ORTHO05D009021 3.0e-47 193.0 224 44.6
BraA07t27796Z Brassica rapa HOM05D005443 ORTHO05D009021 8.7e-47 191.4 241 44.4
Ah.01g015220 Amaranthus hybridus HOM05D005443 ORTHO05D009021 1.5e-46 190.7 213 47.9
Aqoxy1G02515 Aquilegia oxysepala HOM05D005443 ORTHO05D009021 1.5e-46 190.7 235 47.7
BcaB03g16866 Brassica carinata HOM05D005443 ORTHO05D009021 1.5e-46 190.7 222 45.5
Lalb_Chr19g0135291 Lupinus albus HOM05D005443 ORTHO05D009021 1.9e-46 190.3 232 49.1
THA.LOC104814500 Tarenaya hassleriana HOM05D005443 ORTHO05D009021 1.9e-46 190.3 220 47.7
Peaxi162Scf00132g00415 Petunia axillaris HOM05D005443 ORTHO05D009021 2.5e-46 189.9 175 56.0
A07p00040 Brassica napus HOM05D005443 ORTHO05D009021 4.3e-46 189.1 234 44.9
HPP92_025995 Vanilla planifolia HOM05D005443 ORTHO05D009021 5.7e-46 188.7 262 46.2
Oeu017969.1 Olea europaea HOM05D005443 ORTHO05D009021 7.4e-46 188.3 175 56.6
Sopen07g028070 Solanum pennellii HOM05D005443 ORTHO05D009021 2.8e-45 186.4 175 53.1
SGA_v2.0_scaffold109G31118 Striga asiatica HOM05D005443 ORTHO05D009021 2.8e-45 186.4 232 45.3
MELO3C024064.2 Cucumis melo HOM05D005443 ORTHO05D009021 8.2e-45 184.9 175 54.3
Sed0001067 Sechium edule HOM05D005443 ORTHO05D009021 5.3e-44 182.2 175 53.7
BolC7t40469H Brassica oleracea HOM05D005443 ORTHO05D009021 2.0e-43 180.3 261 41.4
C07p00180 Brassica napus HOM05D005443 ORTHO05D009021 3.4e-43 179.5 260 41.5
Sp3g33980 Schrenkiella parvula HOM05D005443 ORTHO05D009021 3.4e-43 179.5 230 43.9
QL08p038456 Quercus lobata HOM05D005443 ORTHO05D009021 1.0e-42 177.9 196 49.0
Lsat_1_v5_gn_8_133320 Lactuca sativa HOM05D005443 ORTHO05D009021 1.3e-42 177.6 197 49.7
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 6.5e-42 175.3 250 42.0
Potri.019G101100 Populus trichocarpa HOM05D005443 ORTHO05D009021 7.9e-40 168.3 144 59.7
PSO675G8511 Papaver somniferum HOM05D005443 ORTHO05D009021 1.4e-39 167.5 280 43.2
unitig_62.g23169 Utricularia gibba HOM05D005443 ORTHO05D009021 9.1e-36 154.8 225 42.2
COL.COLO4_07390 Corchorus olitorius HOM05D005443 ORTHO05D009021 1.2e-35 154.5 250 39.2
Os07g0457550 Oryza sativa ssp. japonica HOM05D005443 ORTHO05D009021 7.7e-35 151.8 217 41.5
BcaC06g36763 Brassica carinata HOM05D005443 ORTHO05D009021 2.9e-34 149.8 175 45.7
BcaC06g36764 Brassica carinata HOM05D005443 ORTHO05D009021 2.9e-34 149.8 175 45.7
CsaV3_7G024480 Cucumis sativus L. HOM05D005443 ORTHO05D009021 1.1e-33 147.9 194 45.9
Nn1g04052 Nelumbo nucifera HOM05D005443 ORTHO05D009021 1.8e-31 140.6 156 51.3
Gohir.D10G119100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 2.3e-31 140.2 143 53.1
Nitab4.5_0000512g0150 Nicotiana tabacum HOM05D005443 ORTHO05D009021 1.5e-30 137.5 149 50.3
Nitab4.5_0002526g0090 Nicotiana tabacum HOM05D005443 ORTHO05D009021 2.0e-30 137.1 152 48.7
EL10Ac9g20753 Beta vulgaris HOM05D005443 ORTHO05D009021 4.8e-29 132.5 152 47.4
Atru.chr6.3005 Acer truncatum HOM05D005443 ORTHO05D009021 8.2e-29 131.7 150 50.7
Ca_25912_v3 Cicer arietinum L. HOM05D005443 ORTHO05D009021 3.5e-27 126.3 194 40.2
Atru.chr2.3463 Acer truncatum HOM05D005443 ORTHO05D009021 2.2e-26 123.6 133 48.9
arahy.Tifrunner.gnm1.ann1.0NFG0V Arachis hypogaea HOM05D005443 ORTHO05D009021 2.5e-25 120.2 213 36.6
Pp3c3_11680 Physcomitrium patens HOM05D005443 ORTHO05D009021 5.5e-25 119.0 208 41.3
Prupe.3G135800 Prunus persica HOM05D005443 ORTHO05D009021 4.7e-24 115.9 114 57.9
CARHR111400 Cardamine hirsuta HOM05D005443 ORTHO05D009021 6.1e-24 115.5 141 41.8
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 4.8e-21 105.9 250 33.6
Glyma.12G111866 Glycine max HOM05D005443 ORTHO05D009021 2.4e-20 103.6 113 48.7
ATR0680G174 Amborella trichopoda HOM05D005443 ORTHO05D009021 9.1e-20 101.7 126 43.7
Atru.chr2.3477 Acer truncatum HOM05D005443 ORTHO05D009021 1.0e-18 98.2 124 49.2
Mapoly0061s0039 Marchantia polymorpha HOM05D005443 ORTHO05D009021 3.8e-18 96.3 227 36.1
AagrBONN_evm.TU.Sc2ySwM_228.5557 Anthoceros agrestis HOM05D005443 ORTHO05D009021 2.7e-16 90.1 256 33.6
EL10Ac9g20752 Beta vulgaris HOM05D005443 ORTHO05D009021 1.4e-15 87.8 72 55.6
Zm00001eb306570 Zea mays HOM05D005443 ORTHO05D009021 2.0e-14 84.0 208 30.3
MSTRG.12821 Avicennia marina HOM05D005443 ORTHO05D009021 3.4e-14 83.2 69 60.9
Hund07945 Selenicereus undatus HOM05D005443 ORTHO05D009021 1.3e-13 81.3 143 34.3
DCAR_016518 Daucus carota HOM05D005443 ORTHO05D009021 8.5e-10 68.6 55 65.5
DCAR_016519 Daucus carota HOM05D005443 ORTHO05D009021 4.4e-06 56.2 92 37.0
Rhsim06G0145200 Rhododendron simsii HOM05D049969 ORTHO05D338462 9.8e-06 55.1 62 50.0


User provided reference genes

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