Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 4.6e-120 434.5 207 100.0
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 2.0e-70 269.6 214 65.4
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 2.8e-69 265.8 219 63.0
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 1.1e-68 263.8 180 72.2
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 4.1e-68 261.9 211 64.9
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 5.9e-67 258.1 212 64.6
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 2.9e-66 255.8 211 62.6
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 3.8e-66 255.4 207 63.8
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 3.8e-66 255.4 192 64.1
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.1e-65 253.8 209 64.6
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 1.1e-65 253.8 209 64.6
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 1.5e-65 253.4 214 62.1
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.9e-65 253.1 209 65.1
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 2.5e-65 252.7 243 56.0
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 7.2e-65 251.1 217 61.3
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 9.4e-65 250.8 214 64.5
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 1.2e-64 250.4 215 59.5
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 2.1e-64 249.6 216 62.5
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 2.1e-64 249.6 207 64.3
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 1.8e-63 246.5 193 64.2
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 4.0e-63 245.4 212 59.9
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 7.5e-62 241.1 176 66.5
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 1.7e-61 240.0 213 61.5
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.2e-61 239.6 209 59.3
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 2.8e-61 239.2 203 61.6
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 1.1e-60 237.3 212 62.3
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 1.6e-59 233.4 214 59.8
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 2.7e-59 232.6 219 58.9
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 2.7e-59 232.6 211 60.2
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 5.9e-59 231.5 213 57.3
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.0e-58 230.7 208 58.7
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 2.9e-58 229.2 207 55.6
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 1.5e-57 226.9 177 61.6
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 1.5e-57 226.9 179 62.0
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 1.9e-57 226.5 174 62.1
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 4.2e-57 225.3 208 60.1
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 5.5e-57 224.9 208 58.2
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 7.2e-57 224.6 208 58.7
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 9.4e-57 224.2 208 58.7
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 1.2e-56 223.8 216 56.9
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 1.2e-56 223.8 213 56.3
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 2.1e-56 223.0 211 56.4
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 2.7e-56 222.6 207 58.0
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 8.0e-56 221.1 115 85.2
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 5.2e-55 218.4 208 55.8
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 1.5e-54 216.9 203 55.7
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 9.8e-54 214.2 204 56.4
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 1.4e-52 210.3 184 58.2
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.4e-52 209.5 153 64.1
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 4.1e-52 208.8 216 52.3
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 4.1e-52 208.8 187 56.1
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 7.0e-52 208.0 203 55.7
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 9.1e-52 207.6 190 55.8
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 9.1e-52 207.6 204 56.4
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 2.0e-51 206.5 190 56.8
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 2.7e-51 206.1 187 62.0
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 2.7e-51 206.1 194 55.2
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.5e-51 205.3 152 63.2
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 7.7e-51 204.5 215 53.0
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.0e-50 204.1 152 63.2
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 1.3e-50 203.8 191 57.1
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 1.3e-50 203.8 188 56.4
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 1.3e-50 203.8 99 89.9
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 1.7e-50 203.4 181 57.5
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 1.7e-50 203.4 181 58.0
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 1.7e-50 203.4 190 55.3
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 3.8e-50 202.2 184 58.2
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 8.6e-50 201.1 181 57.5
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 8.6e-50 201.1 130 70.8
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 8.6e-50 201.1 130 70.8
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 1.5e-49 200.3 181 58.6
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 1.9e-49 199.9 208 54.3
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 4.2e-49 198.7 187 54.5
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 5.5e-49 198.4 182 53.8
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 5.5e-49 198.4 211 51.7
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 7.2e-49 198.0 178 57.3
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 1.2e-48 197.2 207 54.1
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 1.6e-48 196.8 188 55.3
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 2.1e-48 196.4 124 72.6
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 1.8e-47 193.4 190 55.3
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 2.6e-46 189.5 143 64.3
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 3.4e-46 189.1 189 56.1
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 4.4e-46 188.7 100 80.0
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 2.2e-45 186.4 211 49.3
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 1.1e-44 184.1 99 77.8
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 3.1e-44 182.6 119 71.4
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 4.1e-44 182.2 111 68.5
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 9.2e-44 181.0 200 48.0
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 1.7e-42 176.8 215 42.3
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 1.9e-41 173.3 155 57.4
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.5e-41 172.9 102 72.5
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 5.6e-41 171.8 184 51.6
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.2e-40 170.6 119 68.1
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 2.3e-39 166.4 78 92.3
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 1.9e-36 156.8 143 57.3
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 4.6e-35 152.1 107 65.4
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 6.6e-34 148.3 132 54.5
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 1.6e-32 143.7 118 59.3
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 6.2e-32 141.7 219 43.8
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 2.3e-31 139.8 120 54.2
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 3.4e-30 136.0 112 59.8
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 9.8e-30 134.4 146 53.4
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 9.8e-30 134.4 112 58.0
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 9.8e-30 134.4 142 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 1.3e-29 134.0 105 51.4
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 1.1e-28 131.0 172 42.4
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 3.3e-25 119.4 92 56.5
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 2.6e-22 109.8 143 48.3
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 2.4e-20 103.2 148 50.0
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 5.4e-20 102.1 72 61.1
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 6.0e-19 98.6 74 66.2
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.5e-17 94.0 147 44.2
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 2.9e-13 79.7 129 41.1
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 6.4e-13 78.6 68 58.8
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 3.6e-08 62.8 96 35.4


User provided reference genes

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