Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 9.2e-54 213.4 114 100.0
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.1e-46 189.9 113 86.7
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 3.2e-46 188.3 114 85.1
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 9.2e-46 186.8 114 84.2
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.0e-44 183.3 114 83.3
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 1.3e-44 183.0 114 84.2
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.3e-44 183.0 114 82.5
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 1.3e-44 183.0 114 82.5
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 1.3e-44 183.0 114 82.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 82.5
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 4.3e-43 177.9 110 82.7
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 4.3e-43 177.9 114 80.7
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 80.7
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 7.3e-43 177.2 112 82.1
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 9.5e-43 176.8 114 80.7
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 81.7
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 81.7
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 81.7
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 81.7
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 1.6e-42 176.0 112 83.0
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.6e-42 176.0 112 80.4
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.1e-42 175.6 115 82.6
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 82.5
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 79.8
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 2.8e-42 175.3 114 78.9
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.8e-42 175.3 114 79.8
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 77.2
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 3.6e-42 174.9 115 81.7
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 83.3
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 6.2e-42 174.1 115 80.0
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 8.1e-42 173.7 112 78.6
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 79.8
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 78.9
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 80.7
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.1e-41 173.3 114 76.3
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.1e-41 173.3 112 79.5
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 77.2
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 79.8
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 78.9
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 1.8e-41 172.6 115 80.0
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 78.9
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 79.8
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 3.1e-41 171.8 112 77.7
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 78.1
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 3.1e-41 171.8 115 79.1
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 3.1e-41 171.8 115 80.9
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 80.7
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 80.7
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 77.2
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 78.1
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 78.1
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 77.2
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 76.3
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 6.8e-41 170.6 110 80.9
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 8.9e-41 170.2 112 79.5
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 8.9e-41 170.2 112 78.6
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 8.9e-41 170.2 113 78.8
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 75.4
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 77.2
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 75.4
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.5e-40 169.5 112 76.8
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 2.6e-40 168.7 111 77.5
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 2.6e-40 168.7 113 78.8
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 74.6
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 74.6
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 3.4e-40 168.3 111 77.5
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 76.3
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 74.6
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 74.6
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 77.7
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 78.1
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 76.3
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 9.8e-40 166.8 114 75.4
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 9.8e-40 166.8 114 73.7
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 75.4
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 75.4
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 2.2e-39 165.6 114 76.3
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 4.9e-39 164.5 112 74.1
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 4.9e-39 164.5 114 72.8
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.1e-38 163.3 114 74.6
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.1e-38 163.3 114 74.6
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.1e-38 163.3 114 74.6
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.1e-38 163.3 114 74.6
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 1.4e-38 162.9 107 80.4
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.4e-38 162.9 114 75.4
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.9e-38 162.5 114 73.7
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.9e-38 162.5 115 76.5
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 3.2e-38 161.8 114 76.3
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 5.4e-38 161.0 115 73.0
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 9.2e-38 160.2 146 64.4
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 9.2e-38 160.2 142 64.8
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 2.1e-37 159.1 112 74.1
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.7e-37 158.7 115 74.8
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 3.5e-37 158.3 112 71.4
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 4.6e-37 157.9 105 78.1
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 7.8e-37 157.1 114 71.1
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 7.8e-37 157.1 104 77.9
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.3e-36 156.4 108 72.2
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.3e-36 156.4 112 72.3
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 1.7e-36 156.0 112 74.1
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 5.6e-35 151.0 114 70.2
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 5.6e-35 151.0 145 58.6
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 7.3e-35 150.6 114 70.2
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 7.3e-35 150.6 114 71.1
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 9.5e-35 150.2 114 69.3
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 9.5e-35 150.2 114 69.3
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 9.5e-35 150.2 114 69.3
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.2e-34 149.8 114 69.3
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 2.1e-34 149.1 114 68.4
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.8e-34 148.7 114 68.4
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 8.9e-33 143.7 114 66.7
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 2.6e-32 142.1 80 88.8
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.7e-31 139.4 91 79.1
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 6.4e-31 137.5 80 85.0
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 1.9e-30 136.0 84 81.0
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.4e-30 135.6 114 63.2
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 7.1e-30 134.0 78 84.6
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 7.1e-30 134.0 77 88.3
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.6e-29 132.9 105 65.7
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 2.7e-29 132.1 79 82.3
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 2.3e-28 129.0 100 70.0
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.1e-27 126.7 94 74.5
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 5.6e-27 124.4 83 74.7
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 5.6e-27 124.4 83 74.7
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.1e-26 120.6 72 84.7
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 5.2e-25 117.9 65 87.7
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 3.4e-24 115.2 77 77.9
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.3e-23 113.2 77 71.4
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.9e-23 112.1 112 58.0
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 2.4e-22 109.0 114 56.1
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 3.2e-22 108.6 106 50.9
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 7.1e-22 107.5 102 58.8
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.5e-21 105.1 109 51.4
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 6.6e-20 100.9 72 73.6
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.3e-18 96.7 109 46.8
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 4.8e-18 94.7 77 66.2
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 2.4e-17 92.4 77 64.9
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 5.8e-16 87.8 62 74.2
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.3e-15 86.7 63 71.4
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.3e-15 86.7 86 52.3
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 1.9e-14 82.8 51 80.4
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.4e-14 81.3 48 79.2
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 5.4e-14 81.3 106 46.2
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 7.1e-14 80.9 56 80.4
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.2e-13 80.1 45 84.4
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 1.6e-13 79.7 106 43.4
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 3.5e-13 78.6 50 76.0
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 6.0e-13 77.8 104 45.2
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 6.0e-13 77.8 95 49.5
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 3.0e-12 75.5 51 74.5
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 5.1e-12 74.7 55 76.4
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 6.7e-12 74.3 43 86.0
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 4.3e-11 71.6 95 43.2
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 4.3e-11 71.6 43 83.7
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 5.6e-11 71.2 43 81.4
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.2e-10 67.8 66 54.5
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 1.8e-09 66.2 101 46.5
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 3.1e-09 65.5 60 60.0
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 5.3e-09 64.7 92 46.7
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 9.0e-09 63.9 59 49.2
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.5e-08 61.6 58 53.4
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 1.3e-07 60.1 97 44.3


User provided reference genes

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