Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 0.0e+00 1649.4 823 100.0
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 0.0e+00 1119.4 819 68.9
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 0.0e+00 1090.5 813 66.9
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 0.0e+00 1076.2 824 65.8
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 1.1e-311 1073.2 792 67.4
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 8.0e-309 1063.5 781 68.0
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 5.2e-308 1060.8 830 65.9
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 4.7e-301 1037.7 828 62.9
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 2.6e-299 1031.9 818 63.8
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 3.4e-299 1031.6 789 65.8
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 1.3e-298 1029.6 818 64.1
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.7e-298 1029.2 820 63.8
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.9e-297 1025.8 820 62.2
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.1e-294 1016.5 817 63.0
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 5.6e-294 1014.2 770 66.0
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.4e-289 998.8 775 64.1
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 3.2e-289 998.4 857 59.9
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 3.2e-289 998.4 787 62.8
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.0e-288 994.2 817 62.1
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 4.3e-286 988.0 817 61.7
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 4.3e-286 988.0 824 61.8
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 4.3e-286 988.0 805 63.6
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 5.6e-286 987.6 815 61.1
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 8.1e-285 983.8 832 60.3
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.4e-284 983.0 835 60.5
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 1.8e-284 982.6 770 64.4
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.7e-282 976.1 834 59.7
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 2.2e-282 975.7 826 60.9
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 1.4e-281 973.0 817 59.9
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 1.4e-281 973.0 813 61.0
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.4e-281 973.0 834 60.2
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.2e-280 969.9 747 66.1
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 3.5e-280 968.4 829 59.1
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.0e-279 966.8 823 60.0
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.3e-279 966.5 805 60.9
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 1.7e-279 966.1 837 59.3
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 3.0e-279 965.3 812 59.2
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.5e-278 963.0 844 58.9
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.3e-277 959.9 788 60.9
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 2.4e-276 955.7 830 60.2
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 6.9e-276 954.1 830 59.2
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.0e-275 952.6 828 60.3
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 7.6e-275 950.7 807 60.3
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.8e-274 948.3 770 62.9
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 8.4e-274 947.2 797 59.1
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.4e-273 946.4 819 59.2
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.7e-272 942.2 820 59.0
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.9e-270 936.0 820 58.7
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 2.5e-270 935.6 826 58.8
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.6e-269 932.9 824 58.6
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.1e-269 932.6 875 56.2
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 2.1e-269 932.6 808 59.5
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 2.8e-269 932.2 828 57.2
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.1e-268 930.2 795 59.7
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 1.4e-268 929.9 826 58.4
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 6.9e-268 927.5 814 57.2
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.7e-266 922.9 828 56.6
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.6e-264 914.8 834 57.1
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.3e-263 912.5 768 60.0
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 2.3e-263 912.5 823 57.8
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 3.0e-263 912.1 820 57.6
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 6.7e-263 911.0 836 56.7
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.5e-262 909.8 796 58.9
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 3.7e-261 905.2 791 58.3
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 6.2e-261 904.4 821 57.4
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 4.0e-260 901.7 806 57.2
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 2.6e-259 899.0 819 56.7
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 2.6e-259 899.0 758 61.2
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 3.4e-259 898.7 793 57.8
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 4.5e-259 898.3 821 57.2
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 1.0e-258 897.1 818 56.4
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.4e-257 893.3 793 57.6
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.4e-257 893.3 820 56.6
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 2.5e-257 892.5 824 55.3
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.6e-256 889.8 819 56.9
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 2.7e-256 889.0 811 56.4
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.6e-256 888.3 683 66.3
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 4.6e-256 888.3 820 56.8
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.8e-255 886.3 772 58.8
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 8.7e-255 884.0 747 60.1
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.9e-254 882.9 837 56.4
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 2.5e-254 882.5 820 56.6
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 9.6e-254 880.6 832 55.3
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.5e-251 873.2 810 56.7
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 2.5e-249 865.9 794 56.3
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 2.5e-249 865.9 794 56.3
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 4.2e-249 865.1 848 54.5
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 5.5e-249 864.8 773 57.1
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 9.3e-249 864.0 794 56.0
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.6e-248 863.2 791 55.6
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.5e-248 862.1 650 66.0
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 6.1e-248 861.3 819 54.7
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 6.1e-248 861.3 794 55.8
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 2.3e-247 859.4 707 62.7
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.4e-244 850.1 768 56.2
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.8e-244 849.7 725 59.7
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 3.1e-244 849.0 819 53.5
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 4.1e-244 848.6 729 59.3
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 5.3e-244 848.2 780 56.9
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 9.0e-244 847.4 817 53.9
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.1e-241 840.5 786 54.2
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 4.6e-240 835.1 804 55.0
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 8.8e-239 830.9 818 52.3
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.8e-236 823.2 809 54.4
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.3e-234 817.0 798 52.8
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.4e-228 797.0 766 55.9
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 7.7e-219 764.6 692 55.8
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.0e-215 754.2 885 46.4
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.6e-208 730.3 824 47.8
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.0e-207 727.6 629 59.0
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 2.3e-207 726.5 832 46.6
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 4.9e-205 718.8 918 44.9
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 4.5e-203 712.2 665 55.3
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 1.7e-202 710.3 810 45.8
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 2.5e-201 706.4 857 47.8
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.1e-192 676.8 515 65.0
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.6e-192 676.0 835 46.9
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 5.0e-186 655.6 599 56.3
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 8.6e-186 654.8 806 45.7
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 2.5e-185 653.3 708 50.7
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.3e-177 625.9 763 44.2
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.2e-168 597.8 688 46.7
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 6.2e-168 595.5 694 48.3
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.6e-162 575.5 714 45.2
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.1e-145 521.5 452 58.4
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 1.4e-140 504.6 386 64.0
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 6.0e-139 499.2 340 72.4
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 9.6e-137 491.9 343 72.6
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.4e-134 483.4 721 39.4
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 7.6e-134 482.3 528 48.9
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.0e-130 470.3 396 59.6
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 6.7e-106 389.4 323 60.7
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 2.8e-104 384.0 491 43.2
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 1.2e-94 352.1 380 50.5
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 1.6e-94 351.7 768 31.6
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 3.2e-92 344.0 876 28.5
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 3.8e-85 320.5 351 45.9
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 1.8e-79 301.6 407 40.8
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.3e-76 290.8 456 37.9
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 4.7e-75 287.0 292 51.0
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.2e-72 278.1 288 51.7
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 5.2e-66 256.9 510 31.8
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.5e-57 228.8 199 59.3
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 2.6e-57 228.0 182 66.5
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.3e-53 215.7 177 65.5
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.1e-30 138.7 139 50.4
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 8.2e-27 126.7 113 46.9
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.3e-21 108.6 111 51.4
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 6.7e-21 107.1 89 67.4
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 8.2e-19 100.1 123 41.5
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 1.1e-18 99.8 107 50.5
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.8e-13 82.4 66 50.0
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 4.1e-10 71.2 88 44.3
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 5.3e-10 70.9 61 52.5
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 6.9e-10 70.5 36 86.1
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 1.2e-09 69.7 47 63.8
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.9e-08 65.1 46 54.3
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 2.9e-08 65.1 198 27.8
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 3.6e-06 58.2 127 29.9


User provided reference genes

Program Settings