Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 7.9e-109 397.1 201 100.0
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.9e-46 189.9 203 58.1
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 7.0e-41 171.4 207 51.7
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 2.7e-40 169.5 206 50.5
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 3.0e-39 166.0 207 50.7
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 8.6e-39 164.5 204 47.5
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.5e-38 163.7 203 50.7
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.5e-38 162.9 206 50.0
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 2.5e-38 162.9 203 51.7
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 3.3e-38 162.5 202 48.0
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.2e-37 160.6 203 49.8
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 2.1e-37 159.8 203 47.8
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 4.7e-37 158.7 202 47.5
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 6.2e-37 158.3 197 48.2
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 6.2e-37 158.3 202 47.5
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 8.1e-37 157.9 205 49.3
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.1e-36 157.5 204 48.5
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 5.2e-36 155.2 198 44.9
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 6.8e-36 154.8 208 48.1
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 6.8e-36 154.8 203 47.8
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 6.8e-36 154.8 201 47.3
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.2e-35 154.1 205 48.8
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.5e-35 153.7 202 48.5
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.5e-35 153.7 205 48.3
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.0e-35 153.3 209 48.8
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.0e-35 153.3 205 48.3
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 3.4e-35 152.5 204 48.5
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.4e-35 152.5 205 48.3
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 3.4e-35 152.5 202 44.1
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 4.4e-35 152.1 203 45.8
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.4e-35 152.1 205 47.8
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 4.4e-35 152.1 201 45.8
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 5.8e-35 151.8 205 48.3
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 5.8e-35 151.8 208 49.0
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.5e-35 151.4 205 48.3
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 9.9e-35 151.0 205 46.3
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 9.9e-35 151.0 199 47.2
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 9.9e-35 151.0 199 47.2
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 1.7e-34 150.2 202 48.0
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.2e-34 149.8 197 44.7
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 2.9e-34 149.4 203 47.3
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 2.9e-34 149.4 201 46.8
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 8.3e-34 147.9 206 44.2
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.4e-33 147.1 202 42.6
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 1.9e-33 146.7 212 46.7
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.9e-33 146.7 203 50.2
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 3.2e-33 146.0 204 43.1
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.2e-33 146.0 206 42.7
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 5.4e-33 145.2 206 43.2
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 5.4e-33 145.2 205 47.8
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 5.4e-33 145.2 205 47.8
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 5.4e-33 145.2 208 44.7
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 5.4e-33 145.2 197 48.7
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 7.1e-33 144.8 201 45.8
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.6e-32 143.7 202 43.1
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.1e-32 143.3 208 44.2
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.1e-32 143.3 204 45.1
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 2.7e-32 142.9 203 41.4
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 2.7e-32 142.9 203 41.4
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.7e-32 142.9 217 46.1
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.5e-32 142.5 208 42.3
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 4.6e-32 142.1 204 44.6
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 4.6e-32 142.1 204 44.6
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.0e-31 141.0 203 42.9
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 1.0e-31 141.0 201 46.3
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.7e-31 140.2 205 44.9
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.7e-31 140.2 217 42.4
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.7e-31 140.2 203 43.8
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 3.0e-31 139.4 204 44.1
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 3.9e-31 139.0 204 42.6
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 3.9e-31 139.0 204 46.6
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 3.9e-31 139.0 204 46.6
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 5.1e-31 138.7 207 42.5
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 5.1e-31 138.7 203 43.3
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 5.1e-31 138.7 206 42.2
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 8.6e-31 137.9 203 47.3
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 8.6e-31 137.9 201 43.3
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 8.6e-31 137.9 212 42.9
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 1.1e-30 137.5 200 46.5
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.5e-30 137.1 206 41.3
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 1.9e-30 136.7 200 46.5
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 1.9e-30 136.7 206 43.2
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.5e-30 136.3 200 42.5
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 3.3e-30 136.0 203 43.8
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 5.6e-30 135.2 197 45.7
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 9.5e-30 134.4 203 43.3
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.2e-29 134.0 206 43.7
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 1.2e-29 134.0 204 42.2
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.6e-29 133.7 205 42.9
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.6e-29 133.7 201 44.8
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.6e-29 133.7 200 44.5
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.6e-29 133.7 216 41.2
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 2.8e-29 132.9 206 42.2
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.8e-29 132.9 202 41.1
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.8e-29 132.9 202 41.1
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.8e-29 132.9 202 41.1
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 2.8e-29 132.9 198 41.9
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.8e-29 132.9 270 35.6
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.6e-29 132.5 202 45.0
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.6e-29 132.5 202 45.0
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 4.7e-29 132.1 207 43.5
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 8.1e-29 131.3 203 41.4
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 1.1e-28 131.0 202 42.6
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.1e-28 131.0 203 39.4
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.1e-28 131.0 204 42.6
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.1e-28 131.0 207 41.1
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.4e-28 130.6 201 43.8
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.4e-28 130.6 199 41.7
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.8e-28 130.2 205 39.0
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.8e-28 130.2 189 46.6
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.8e-28 130.2 204 40.7
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.8e-28 130.2 204 43.1
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.4e-28 129.8 201 42.3
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.1e-28 129.4 202 44.6
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 4.0e-28 129.0 203 40.9
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 4.0e-28 129.0 202 40.6
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 4.0e-28 129.0 202 40.6
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.0e-28 129.0 202 43.6
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 5.2e-28 128.6 207 42.0
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 6.8e-28 128.3 202 41.6
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.5e-27 127.1 153 52.3
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 3.4e-27 125.9 205 41.0
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 4.4e-27 125.6 261 37.2
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 7.6e-27 124.8 201 40.8
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 7.6e-27 124.8 201 42.3
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.7e-26 123.6 197 41.1
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 2.2e-26 123.2 201 39.8
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.4e-25 120.6 90 66.7
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.9e-25 120.2 204 39.2
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 9.2e-25 117.9 197 45.7
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.2e-24 117.5 203 42.9
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 2.1e-24 116.7 203 41.4
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 3.5e-24 115.9 88 62.5
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 3.9e-23 112.5 210 37.1
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.5e-22 110.5 132 48.5
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 1.9e-22 110.2 181 43.1
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 8.1e-21 104.8 176 43.8
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 2.4e-20 103.2 153 45.8
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 5.3e-20 102.1 88 58.0
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 9.0e-20 101.3 196 37.8
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 2.6e-19 99.8 130 46.9
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 2.9e-18 96.3 107 53.3
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 3.8e-18 95.9 163 39.9
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 4.9e-18 95.5 134 41.8
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 4.2e-17 92.4 139 43.2
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 7.1e-17 91.7 121 43.8
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 9.3e-17 91.3 204 37.3
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 2.1e-16 90.1 133 39.8
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 6.0e-16 88.6 158 41.1
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 3.0e-15 86.3 182 36.3
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 3.3e-14 82.8 168 38.1
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.3e-13 80.9 165 34.5
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 1.1e-12 77.8 165 35.8
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 6.9e-12 75.1 161 36.0
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 9.0e-12 74.7 158 34.2
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 8.4e-10 68.2 54 63.0
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 2.4e-09 66.6 44 77.3
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.2e-09 65.9 44 75.0
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.2e-09 65.9 44 75.0
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 6.0e-08 62.0 51 58.8
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 1.1e-06 57.8 100 39.0
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 2.5e-06 56.6 157 32.5


User provided reference genes

Program Settings