Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 0.0e+00 1079.3 576 100.0
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 1.5e-181 640.2 533 60.0
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 6.0e-170 601.7 554 57.6
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 6.7e-169 598.2 514 58.0
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 1.1e-168 597.4 528 57.4
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 1.6e-167 593.6 522 57.7
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 6.3e-167 591.7 412 66.5
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 6.3e-167 591.7 412 66.3
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 1.8e-166 590.1 520 57.9
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 6.9e-166 588.2 412 67.5
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 1.5e-165 587.0 412 66.3
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 1.7e-164 583.6 516 58.1
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 2.9e-164 582.8 418 66.0
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 5.0e-164 582.0 523 56.8
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 5.0e-164 582.0 518 57.1
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 4.2e-163 578.9 517 56.9
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 4.2e-163 578.9 412 65.5
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 9.4e-163 577.8 513 56.5
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 1.6e-162 577.0 512 57.6
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 4.6e-162 575.5 530 55.3
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 6.1e-162 575.1 530 55.7
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 1.8e-161 573.5 412 64.8
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 3.9e-161 572.4 402 64.7
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 1.1e-160 570.9 403 64.8
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 4.3e-160 568.9 413 65.6
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 5.7e-160 568.5 549 53.6
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 8.2e-159 564.7 496 58.3
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 1.4e-158 563.9 546 53.7
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 2.4e-158 563.1 529 53.1
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 9.1e-158 561.2 404 64.6
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 9.1e-158 561.2 404 64.4
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 9.1e-158 561.2 403 65.8
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 9.1e-158 561.2 403 65.8
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 1.5e-157 560.5 512 55.3
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 2.0e-157 560.1 402 62.7
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 2.6e-157 559.7 479 57.8
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 2.9e-156 556.2 402 62.7
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 1.9e-155 553.5 409 64.1
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 2.5e-155 553.1 402 64.4
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 3.2e-155 552.7 406 65.3
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 4.2e-155 552.4 402 64.2
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 1.2e-154 550.8 434 60.6
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 1.6e-154 550.4 506 54.2
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 2.1e-154 550.1 480 56.9
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 2.7e-154 549.7 402 62.9
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 2.7e-154 549.7 404 63.1
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 5.1e-153 545.4 492 56.5
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 5.1e-153 545.4 406 64.3
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 2.0e-152 543.5 513 54.8
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 2.8e-151 539.7 406 63.8
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 2.8e-151 539.7 509 53.8
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 3.7e-151 539.3 406 63.8
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 6.3e-151 538.5 418 60.5
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 1.8e-150 537.0 406 63.5
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 3.1e-150 536.2 395 61.8
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 1.5e-149 533.9 509 53.4
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 5.9e-149 531.9 419 60.6
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 7.7e-149 531.6 414 59.7
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 7.7e-149 531.6 414 61.8
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 1.3e-148 530.8 408 61.3
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 1.3e-148 530.8 418 59.1
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 1.7e-148 530.4 419 60.4
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 2.2e-148 530.0 500 54.2
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 3.8e-148 529.3 417 58.5
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 5.0e-148 528.9 392 64.3
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 5.0e-148 528.9 518 52.3
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 1.9e-147 526.9 422 60.4
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 3.2e-147 526.2 414 60.6
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 1.6e-146 523.9 414 60.4
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 6.1e-146 521.9 509 53.0
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 2.3e-145 520.0 501 52.1
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 3.9e-145 519.2 501 51.9
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 8.8e-145 518.1 493 54.4
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 1.5e-144 517.3 493 54.8
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 2.6e-144 516.5 506 51.0
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 4.1e-142 509.2 399 58.6
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 2.6e-141 506.5 466 54.9
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 7.7e-141 505.0 413 57.9
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 1.5e-139 500.7 599 47.4
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 1.5e-136 490.7 513 51.5
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 4.5e-133 479.2 350 60.3
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 1.6e-130 470.7 389 56.8
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 1.1e-118 431.4 292 68.2
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 5.9e-117 425.6 293 66.6
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 2.9e-116 423.3 288 66.0
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 2.5e-115 420.2 429 45.5
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 8.0e-114 415.2 380 50.3
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 2.3e-113 413.7 384 49.2
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 1.6e-109 401.0 278 67.3
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 1.7e-108 397.5 416 46.2
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 1.8e-105 387.5 285 64.6
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 8.3e-103 378.6 274 64.2
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 1.1e-97 361.7 500 43.2
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.0e-92 345.1 271 63.5
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 6.6e-92 342.4 398 45.0
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 1.2e-90 338.2 340 47.6
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 7.6e-88 328.9 340 46.5
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 1.1e-86 325.1 398 43.2
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 7.1e-86 322.4 235 61.7
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 2.7e-85 320.5 225 64.4
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 3.5e-85 320.1 217 64.5
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 4.3e-83 313.2 256 62.1
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 2.5e-62 244.2 504 33.5
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 7.1e-62 242.7 162 69.1
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 1.2e-61 241.9 260 51.2
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 2.6e-56 224.2 309 37.5
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 6.3e-50 203.0 280 36.1
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 1.7e-39 168.3 407 31.0
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 3.6e-37 160.6 110 67.3
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 6.1e-37 159.8 380 30.0
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 3.3e-35 154.1 117 61.5
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 9.7e-35 152.5 117 59.0
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 3.1e-33 147.5 120 56.7
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 5.3e-33 146.7 117 58.1
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 5.9e-32 143.3 99 69.7
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 7.7e-32 142.9 117 55.6
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.4e-25 121.3 91 64.8
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 3.5e-24 117.5 327 29.7
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 2.9e-23 114.4 124 46.0
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 5.5e-22 110.2 98 57.1
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.1e-17 95.9 62 67.7
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 5.0e-15 87.0 66 63.6
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 1.6e-08 65.5 35 68.6
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.0e-07 62.8 37 73.0
SEGI_04489 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 5.6e-06 57.0 34 67.6


User provided reference genes

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