Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1594.3 838 100.0
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1380.2 837 84.9
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1374.8 839 84.5
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1372.1 841 84.1
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1365.1 838 84.5
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1365.1 837 83.8
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1365.1 838 85.4
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1361.7 838 83.9
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1359.4 839 83.9
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1357.4 839 83.7
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1355.5 840 83.8
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1353.2 837 82.3
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1345.5 838 83.1
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1343.9 841 83.1
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1342.0 838 83.3
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1340.1 839 82.7
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1337.4 840 83.5
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1336.2 838 82.6
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1335.5 838 82.8
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1334.7 841 82.9
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1333.2 840 82.4
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1332.8 839 81.6
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1330.9 839 82.1
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1330.1 841 82.8
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1329.7 841 82.8
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1325.1 839 82.2
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1323.5 841 82.4
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1317.8 837 82.1
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1317.4 837 81.8
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1312.4 840 79.9
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1308.5 861 80.3
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1308.1 840 80.2
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1308.1 840 80.5
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1305.0 838 81.7
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1305.0 840 80.2
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1302.0 840 79.6
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1300.4 837 81.4
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1300.0 931 74.7
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1297.7 838 81.4
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1296.6 838 80.9
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1294.6 846 79.3
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1294.3 837 80.5
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1293.1 841 79.4
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1292.3 838 81.1
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1291.6 841 80.7
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1290.0 833 80.1
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1289.6 837 79.3
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1283.1 841 78.8
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1278.5 841 78.6
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1276.9 841 78.4
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1272.7 841 78.0
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1270.4 841 78.2
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1267.3 840 77.7
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1266.9 839 77.2
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1265.8 841 78.1
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1265.8 838 78.6
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1265.4 838 77.1
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1262.7 841 77.5
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1259.6 839 78.7
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1259.2 838 76.7
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1258.4 839 78.1
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1253.0 840 77.3
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1253.0 838 78.2
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1250.3 839 76.9
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1250.0 840 76.4
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1249.6 853 78.4
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1248.8 841 76.8
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1248.8 853 78.2
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1248.4 840 77.3
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1247.3 842 77.1
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1246.5 841 77.2
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1244.6 842 76.7
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1244.6 837 77.7
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1244.2 842 76.7
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1244.2 842 76.7
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1241.5 842 76.8
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1233.4 840 76.4
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1230.7 839 75.9
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1224.2 838 75.4
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1221.8 857 73.6
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1220.3 857 73.5
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1219.1 840 74.9
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1218.4 838 74.6
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1215.3 840 74.6
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1208.0 839 74.6
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1204.5 837 74.2
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1191.0 808 76.9
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1187.6 841 72.3
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1183.3 855 72.7
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1178.7 744 81.7
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1177.2 865 73.6
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1171.8 837 73.2
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1171.0 840 74.6
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1164.8 725 83.9
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1156.4 998 63.6
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 0.0e+00 1112.4 841 69.0
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 1.5e-307 1059.3 836 69.4
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 2.5e-302 1042.0 682 78.7
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 1.2e-296 1023.1 722 72.7
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 5.4e-260 901.4 858 56.4
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 2.3e-258 896.0 857 56.9
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 1.2e-240 837.0 522 82.2
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 3.7e-237 825.5 843 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.1e-232 809.7 748 58.6
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 3.4e-230 802.4 544 75.7
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 2.1e-227 793.1 542 74.0
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 2.3e-226 789.6 609 68.3
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.3e-221 773.9 620 67.9
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.3e-216 757.3 504 79.2
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 3.0e-202 709.5 902 46.0
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 6.5e-197 691.8 426 84.3
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 3.1e-191 672.9 564 64.7
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 1.8e-186 657.1 447 79.4
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 9.1e-175 618.2 441 75.1
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 7.5e-161 572.0 343 84.8
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 6.1e-155 552.4 396 71.0
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 5.9e-150 535.8 462 65.6
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 3.3e-124 450.3 373 65.7
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 1.1e-122 445.3 341 68.6
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 1.3e-120 438.3 293 78.8
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.5e-105 388.3 264 77.7
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 2.6e-105 387.5 234 82.1
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 4.9e-104 383.3 234 80.3
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 2.7e-102 377.5 866 31.8
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 3.0e-101 374.0 428 51.9
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.8e-77 295.0 211 70.1
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 2.3e-77 294.7 860 28.0
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 6.1e-70 270.0 230 65.7
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 7.4e-68 263.1 269 56.9
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.2e-62 245.7 200 64.5
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 4.7e-62 243.8 289 50.9
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 5.7e-60 236.9 179 70.9
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 3.5e-57 227.6 209 67.9
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 3.3e-52 211.1 130 78.5
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 1.9e-47 195.3 125 81.6
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 1.6e-46 192.2 122 75.4
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 5.7e-44 183.7 105 93.3
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 1.6e-41 175.6 103 83.5
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 1.0e-40 172.9 103 82.5
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 5.7e-36 157.1 96 77.1
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 1.3e-35 156.0 96 78.1
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 5.4e-34 150.6 97 76.3
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 4.5e-33 147.5 139 56.8
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 5.9e-33 147.1 95 76.8
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 4.3e-31 141.0 232 39.7
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.2e-30 139.4 95 72.6
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 2.0e-28 132.1 95 71.6
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 2.3e-24 118.6 87 77.0
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 8.6e-24 116.7 140 49.3
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 3.3e-23 114.8 229 37.1
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 1.2e-22 112.8 176 40.9
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 1.6e-22 112.5 214 37.4
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 2.0e-20 105.5 82 67.1
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 2.6e-20 105.1 92 64.1
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 2.4e-18 98.6 78 74.4
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 4.6e-17 94.4 72 72.2
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 6.0e-17 94.0 99 43.4
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 9.9e-12 76.6 58 67.2
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 4.9e-11 74.3 158 35.4
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.0e-08 66.6 67 53.7
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 1.3e-08 66.2 61 59.0


User provided reference genes

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