Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 3.3e-73 278.5 164 100.0
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 4.0e-42 175.3 164 59.8
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 4.0e-42 175.3 132 68.9
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 7.0e-39 164.5 132 67.4
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 1.6e-38 163.3 132 65.2
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.0e-37 160.6 166 63.3
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 1.3e-37 160.2 164 58.5
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 1.3e-37 160.2 164 55.5
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 1.3e-37 160.2 130 62.3
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 1.7e-37 159.8 164 56.1
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 5.0e-37 158.3 132 63.6
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 8.6e-37 157.5 167 62.9
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 8.6e-37 157.5 133 65.4
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 2.5e-36 156.0 132 62.1
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 3.3e-36 155.6 167 62.9
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 3.3e-36 155.6 132 63.6
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 4.3e-36 155.2 131 64.1
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 5.6e-36 154.8 130 61.5
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 9.5e-36 154.1 130 62.3
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 1.2e-35 153.7 168 59.5
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 2.1e-35 152.9 163 53.4
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 3.6e-35 152.1 164 57.3
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 4.7e-35 151.8 164 53.0
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 6.2e-35 151.4 132 60.6
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 1.8e-34 149.8 131 61.8
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 1.8e-34 149.8 132 59.8
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 2.3e-34 149.4 164 53.0
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 3.1e-34 149.1 133 60.2
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 3.1e-34 149.1 133 60.2
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 4.0e-34 148.7 133 60.2
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 4.0e-34 148.7 133 58.6
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 5.2e-34 148.3 133 60.2
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 5.2e-34 148.3 131 60.3
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 8.9e-34 147.5 133 58.6
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 8.9e-34 147.5 132 58.3
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 8.9e-34 147.5 132 57.6
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 8.9e-34 147.5 132 57.6
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 1.2e-33 147.1 133 59.4
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 1.5e-33 146.7 133 59.4
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 1.5e-33 146.7 165 52.1
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 3.4e-33 145.6 132 57.6
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 7.5e-33 144.4 132 60.6
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 7.5e-33 144.4 132 56.8
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 1.7e-32 143.3 133 60.2
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 1.7e-32 143.3 121 61.2
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 2.9e-32 142.5 127 59.8
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 3.7e-32 142.1 129 57.4
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 6.4e-32 141.4 133 56.4
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 8.3e-32 141.0 124 61.3
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 1.9e-31 139.8 168 55.4
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 2.4e-31 139.4 132 58.3
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 2.4e-31 139.4 163 50.9
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 2.4e-31 139.4 131 58.0
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 3.2e-31 139.0 132 57.6
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 3.2e-31 139.0 132 58.3
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 9.2e-31 137.5 131 55.7
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 1.6e-30 136.7 163 49.7
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 2.7e-30 136.0 126 56.3
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 3.5e-30 135.6 136 57.4
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 4.6e-30 135.2 164 55.5
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 7.8e-30 134.4 132 59.1
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.3e-29 133.7 136 55.9
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 3.0e-29 132.5 165 51.5
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 3.9e-29 132.1 164 51.2
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 3.9e-29 132.1 126 54.0
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 6.6e-29 131.3 134 53.0
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 6.6e-29 131.3 203 42.9
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 1.5e-28 130.2 132 56.1
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 4.3e-28 128.6 142 52.8
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 5.6e-28 128.3 131 55.7
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 1.2e-27 127.1 155 48.4
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 3.6e-27 125.6 134 53.0
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 1.1e-26 124.0 131 55.7
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 1.1e-26 124.0 126 53.2
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 1.4e-26 123.6 131 52.7
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 1.8e-26 123.2 135 51.1
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 5.2e-26 121.7 133 52.6
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.5e-25 120.2 156 43.6
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 4.4e-25 118.6 129 51.9
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 6.4e-24 114.8 135 52.6
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 1.1e-23 114.0 100 65.0
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 1.1e-23 114.0 118 53.4
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 1.9e-23 113.2 137 48.9
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 3.2e-23 112.5 109 56.0
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 7.1e-23 111.3 106 58.5
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 1.3e-21 107.1 126 50.0
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 3.9e-21 105.5 126 49.2
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 6.6e-21 104.8 122 50.8
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 8.6e-21 104.4 129 46.5
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 1.1e-20 104.0 126 48.4
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 1.5e-20 103.6 89 58.4
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 1.9e-20 103.2 120 53.3
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 2.5e-20 102.8 97 59.8
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 3.3e-20 102.4 129 48.8
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 4.3e-20 102.1 132 44.7
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 9.5e-20 100.9 147 44.9
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 1.2e-19 100.5 134 44.8
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 1.2e-19 100.5 134 44.8
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 3.1e-18 95.9 100 54.0
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 6.8e-18 94.7 128 44.5
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 2.6e-17 92.8 105 47.6
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 7.6e-17 91.3 101 51.5
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 1.7e-16 90.1 90 54.4
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 2.2e-16 89.7 103 44.7
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 4.9e-16 88.6 80 55.0
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 1.9e-15 86.7 80 52.5
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 3.2e-15 85.9 85 50.6
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 1.5e-12 77.0 84 56.0
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 1.9e-12 76.6 100 43.0
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 3.3e-12 75.9 77 51.9
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 3.3e-12 75.9 83 56.6
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.6e-12 75.1 75 53.3
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 7.3e-12 74.7 85 43.5
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 9.6e-12 74.3 85 51.8
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 2.1e-11 73.2 75 50.7
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 3.6e-11 72.4 89 47.2
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 4.7e-11 72.0 84 53.6
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 6.2e-11 71.6 107 46.7
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 1.4e-10 70.5 83 54.2
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 3.1e-10 69.3 80 45.0
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 5.2e-10 68.6 93 49.5
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 2.0e-09 66.6 108 38.0
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 7.6e-09 64.7 125 33.6
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 6.4e-08 61.6 53 52.8
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 1.2e-06 57.4 125 31.2
CARHR144210 Cardamine hirsuta HOM05D005827 ORTHO05D005864 2.7e-06 56.2 52 61.5
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 7.8e-06 54.7 69 46.4


User provided reference genes

Program Settings