Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.3e-91 339.7 178 100.0
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.5e-58 229.9 175 68.6
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 1.4e-56 223.4 176 68.2
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 4.0e-56 221.9 173 64.7
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 1.2e-55 220.3 176 66.5
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 5.8e-55 218.0 176 66.5
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 2.2e-54 216.1 175 65.7
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 3.8e-54 215.3 172 66.3
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 4.9e-54 214.9 174 64.4
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 8.4e-54 214.2 172 64.5
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 3.2e-53 212.2 173 61.3
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.2e-52 210.3 175 62.9
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 1.6e-52 209.9 172 66.3
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 3.5e-52 208.8 174 61.5
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 3.0e-51 205.7 169 63.3
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 6.7e-51 204.5 179 60.3
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 6.7e-51 204.5 179 60.3
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 6.7e-51 204.5 182 62.1
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 8.7e-51 204.1 176 58.5
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 8.7e-51 204.1 173 61.8
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.5e-50 203.4 174 61.5
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 5.6e-50 201.4 169 59.8
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 7.4e-50 201.1 173 60.1
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 1.6e-49 199.9 176 58.0
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 3.7e-49 198.7 176 58.0
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 6.2e-49 198.0 172 60.5
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 8.1e-49 197.6 153 64.7
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 8.1e-49 197.6 153 64.7
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 1.1e-48 197.2 176 57.4
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 1.1e-48 197.2 176 57.4
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.1e-48 197.2 175 58.3
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.1e-48 197.2 173 60.1
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.4e-48 196.8 176 58.0
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.4e-48 196.1 176 57.4
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 3.1e-48 195.7 176 56.8
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 3.1e-48 195.7 176 56.8
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 6.9e-48 194.5 176 55.1
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 6.9e-48 194.5 175 58.9
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.5e-47 193.4 200 53.5
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.6e-47 192.6 168 57.7
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.6e-47 192.6 175 58.9
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 3.4e-47 192.2 178 55.1
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 4.5e-47 191.8 180 55.6
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 4.5e-47 191.8 180 55.6
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 4.5e-47 191.8 179 57.0
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 9.9e-47 190.7 175 56.0
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 9.9e-47 190.7 176 56.2
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 1.3e-46 190.3 172 57.6
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 1.3e-46 190.3 179 59.8
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.2e-46 189.5 175 59.4
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 2.9e-46 189.1 179 55.3
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 4.9e-46 188.3 168 56.5
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 4.9e-46 188.3 153 62.7
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 8.4e-46 187.6 175 57.7
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 5.5e-45 184.9 168 58.3
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 9.3e-45 184.1 171 56.1
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.2e-44 183.7 177 55.4
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 1.6e-44 183.3 201 50.2
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 2.7e-44 182.6 181 56.4
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.5e-44 182.2 174 54.6
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 4.6e-44 181.8 172 55.8
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 6.0e-44 181.4 166 55.4
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.3e-43 180.3 151 60.3
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 2.3e-43 179.5 178 53.9
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 3.9e-43 178.7 175 57.1
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 8.7e-43 177.6 169 54.4
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 8.7e-43 177.6 165 56.4
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 8.7e-43 177.6 165 56.4
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 4.3e-42 175.3 171 52.6
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 4.3e-42 175.3 167 55.7
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.1e-41 172.9 168 57.1
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 3.7e-41 172.2 171 55.0
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 1.1e-40 170.6 154 60.4
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 3.1e-40 169.1 173 57.2
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 5.3e-40 168.3 169 56.2
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 4.5e-39 165.2 157 57.3
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 4.5e-39 165.2 156 55.8
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 1.0e-38 164.1 175 53.7
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 1.7e-38 163.3 174 52.3
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.7e-38 163.3 168 53.0
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 3.8e-38 162.2 153 54.9
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 4.9e-38 161.8 133 63.9
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.1e-37 160.6 170 51.2
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 1.4e-37 160.2 164 53.0
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 5.5e-37 158.3 169 47.3
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.6e-36 156.8 148 54.1
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 2.7e-36 156.0 130 64.6
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.5e-36 155.6 130 60.0
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 3.5e-36 155.6 171 50.9
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 3.5e-36 155.6 171 51.5
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 1.0e-35 154.1 176 47.7
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 1.3e-35 153.7 172 51.2
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 1.8e-35 153.3 153 54.2
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 2.3e-35 152.9 167 50.3
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.1e-34 150.6 147 55.1
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 5.7e-34 148.3 145 55.2
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 7.4e-34 147.9 173 48.0
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 1.6e-33 146.7 135 56.3
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.6e-33 146.7 164 48.8
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.2e-33 146.4 216 44.4
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.2e-33 146.4 209 45.9
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 2.2e-33 146.4 168 51.8
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 6.3e-33 144.8 174 47.1
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 8.2e-33 144.4 174 50.0
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 8.2e-33 144.4 130 59.2
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 1.8e-32 143.3 171 48.0
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 1.8e-32 143.3 171 48.0
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 1.8e-32 143.3 174 48.9
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 3.1e-32 142.5 165 45.5
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 4.1e-32 142.1 130 55.4
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 4.1e-32 142.1 161 49.1
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 5.3e-32 141.7 217 44.2
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.5e-31 140.2 154 50.6
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 2.6e-31 139.4 147 52.4
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 2.6e-31 139.4 135 54.1
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 4.5e-31 138.7 276 36.6
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 7.6e-31 137.9 161 47.2
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.9e-30 136.0 146 53.4
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 1.9e-29 133.3 161 47.2
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.2e-28 130.6 155 51.0
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 2.1e-28 129.8 185 44.9
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 2.1e-28 129.8 131 55.0
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.6e-28 129.0 154 46.8
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 2.3e-27 126.3 135 51.9
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.5e-26 123.6 88 67.0
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 4.3e-26 122.1 176 42.6
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.8e-24 116.7 112 57.1
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 9.1e-24 114.4 143 43.4
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.2e-23 114.0 174 40.8
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.5e-23 113.6 175 41.1
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 7.7e-23 111.3 173 41.0
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.0e-22 110.9 113 54.0
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 2.2e-22 109.8 158 44.3
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 7.2e-21 104.8 100 55.0
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 3.6e-20 102.4 84 66.7
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 5.1e-19 98.6 78 57.7
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 2.8e-17 92.8 169 35.5
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 4.8e-17 92.0 82 61.0
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 5.3e-16 88.6 90 54.4
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 9.1e-16 87.8 84 60.7
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.5e-15 87.0 83 59.0
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 5.9e-15 85.1 85 55.3
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 7.7e-15 84.7 85 55.3
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.1e-13 80.9 129 41.9
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.1e-12 76.6 140 41.4
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 2.1e-12 76.6 164 34.8
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 2.1e-12 76.6 114 44.7
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 2.8e-09 66.2 61 57.4
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.2e-06 56.6 43 72.1
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 5.0e-06 55.5 66 53.0
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 8.5e-06 54.7 41 70.7


User provided reference genes

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